Factsheet for Solyc07g062680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032269	Potato	nucleus	95.75	95.75
Solyc12g014140.1.1	Tomato	nucleus	53.75	54.57
Solyc07g053410.2.1	Tomato	cytosol	26.25	43.03
TraesCS3B01G164500.1	Wheat	nucleus	48.0	42.67
TraesCS3A01G140100.1	Wheat	nucleus	48.25	42.23
TraesCS3D01G146900.1	Wheat	nucleus	47.75	42.07
Solyc05g012840.1.1	Tomato	nucleus	23.0	41.26
Zm00001d008919_P001	Maize	nucleus, plastid	43.0	40.47
Solyc10g018710.1.1	Tomato	nucleus	16.25	38.01
Os01t0213800-01	Rice	mitochondrion	49.0	33.85
Solyc02g065800.1.1	Tomato	cytosol, plastid	11.75	33.1
Zm00001d039371_P001	Maize	mitochondrion	46.75	33.1
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	48.5	32.88
Os01t0755500-01	Rice	cytosol, mitochondrion	35.75	32.06
Zm00001d043423_P001	Maize	nucleus	34.75	32.03
KXG33398	Sorghum	nucleus	35.75	31.71
Solyc05g032780.1.1	Tomato	nucleus	16.25	30.66
Solyc11g045640.1.1	Tomato	nucleus	16.75	30.59
OQU86111	Sorghum	plastid	47.0	29.98
Solyc02g077250.2.1	Tomato	nucleus	25.75	29.1
HORVU0Hr1G006890.2	Barley	cytosol	13.25	24.65
Solyc08g048370.2.1	Tomato	cytosol	19.0	23.31
Solyc08g048390.1.1	Tomato	nucleus	22.0	22.74
Solyc06g069460.1.1	Tomato	plastid	15.75	22.66
Solyc02g089020.1.1	Tomato	nucleus, plastid	15.25	21.48
Solyc03g115010.1.1	Tomato	plastid	17.0	19.94
Zm00001d012725_P002	Maize	plastid	33.5	19.2
Solyc03g045030.1.1	Tomato	nucleus	8.25	18.03
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	10.75	17.84
Solyc04g006980.1.1	Tomato	nucleus	16.25	17.33
Solyc10g008780.1.1	Tomato	nucleus	24.0	16.49
Solyc03g119770.2.1	Tomato	nucleus	13.75	15.9
Solyc05g009900.1.1	Tomato	nucleus	12.75	14.45
Solyc06g069240.1.1	Tomato	nucleus	13.0	12.81

Protein Annotations

MapMan:15.5.19	UniProt:A2I5C7	ProteinID:ABM65600.1	ncoils:Coil	EMBL:EF091571	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF66	EnsemblPlantsGene:Solyc07g062680.1	EnsemblPlants:Solyc07g062680.1.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0000EDA3BD
SEG:seg	:	:	:	:	:

Description

Lanceolate [Source:UniProtKB/TrEMBL;Acc:A2I5C7]

Coordinates

chr7:+:65369983..65371185

Molecular Weight (calculated)

43400.0 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.663

Length

400 amino acids

Sequence
(BLAST)

001: MAETSRLGIR NTVGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD VQDRLGYDRP SKAVDWLIKK AKPAIDELAE LPAWKPTIGT
101: ASAAAATNTN LEQEQAQKQQ EDNNFAFQQG NVSLFDNVAG PSSKRAIESN TASFLPPSLE SDAIADTIKS FFPMGSSTSA NSSAMQFHSF QEPHMLSRAN
201: SQNQDLSLSL QFQDPILLHH QNQQAQHHNQ TNHREQEQVQ GQAPAHFGGN TPLGFDTSGW SMHQRLRSWS DSREIGPGGS GGAVTGPGGY LFNSPPAPAL
301: LQQLFGQNQF FSQRGPLQSS NTSSVRAWMD PSAIAIASGD PSNHHQAALS MYPSTIPGYG FASEVGGFSG FRIPARIQGE EEEHDGISDK PSSASSDSRH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.