Factsheet for Solyc08g048390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g048370.2.1	Tomato	cytosol	59.69	70.86
VIT_10s0003g03910.t01	Wine grape	nucleus	54.26	47.3
OQU89064	Sorghum	cytosol	9.04	43.75
Solyc02g065800.1.1	Tomato	cytosol, plastid	15.5	42.25
AT4G18390.1	Thale cress	nucleus	38.76	41.1
CDY60877	Canola	nucleus	37.98	41.06
KRH11155	Soybean	nucleus	52.71	39.92
GSMUA_Achr7P01160_001	Banana	nucleus	39.28	39.79
Bra012600.1-P	Field mustard	nucleus	39.02	39.53
GSMUA_Achr2P12990_001	Banana	nucleus	38.5	39.42
GSMUA_Achr4P31520_001	Banana	nucleus	38.24	38.95
CDY55633	Canola	nucleus	38.24	38.74
KRH21093	Soybean	nucleus	52.71	38.35
KRH58674	Soybean	nucleus	47.29	38.28
GSMUA_Achr5P02530_001	Banana	nucleus	37.73	38.22
KRH42567	Soybean	nucleus	45.74	37.82
GSMUA_Achr4P22960_001	Banana	nucleus	37.21	37.7
HORVU2Hr1G060120.1	Barley	nucleus	39.53	37.14
TraesCS2D01G252100.1	Wheat	nucleus	39.28	36.54
TraesCS2B01G265800.1	Wheat	nucleus	39.28	35.85
CDY01537	Canola	nucleus	27.13	34.2
HORVU5Hr1G008340.2	Barley	nucleus	25.84	33.9
TraesCS5D01G040100.1	Wheat	nucleus	25.84	33.9
TraesCS5A01G031900.1	Wheat	nucleus	25.84	33.67
TraesCS5B01G032000.1	Wheat	nucleus	26.1	33.67
Zm00001d007868_P001	Maize	nucleus	37.47	32.95
EES16387	Sorghum	cytosol, nucleus, plastid	25.58	32.78
Os03t0785800-01	Rice	nucleus	30.23	32.77
Zm00001d018806_P001	Maize	nucleus	36.95	32.72
Os07t0152000-01	Rice	nucleus	37.21	32.36
EER95875	Sorghum	cytosol, nucleus, peroxisome	38.5	32.32
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	31.27	31.76
KXG37409	Sorghum	cytosol	31.52	31.36
Zm00001d022256_P001	Maize	nucleus	26.1	31.27
Zm00001d034353_P001	Maize	cytosol	30.49	30.57
HORVU5Hr1G103400.1	Barley	nucleus	31.52	30.5
TraesCS5B01G426200.1	Wheat	nucleus	31.01	29.7
TraesCS5D01G432500.1	Wheat	nucleus	30.75	29.68
TraesCS5A01G423900.1	Wheat	cytosol	31.01	29.63
Solyc10g018710.1.1	Tomato	nucleus	12.4	28.07
TraesCS2A01G251100.1	Wheat	plastid, vacuole	38.5	27.19
Solyc05g012840.1.1	Tomato	nucleus	14.99	26.01
Solyc02g089020.1.1	Tomato	nucleus, plastid	18.6	25.35
Solyc06g069460.1.1	Tomato	plastid	17.83	24.82
Solyc07g053410.2.1	Tomato	cytosol	15.25	24.18
Solyc05g032780.1.1	Tomato	nucleus	12.14	22.17
Solyc07g062680.1.1	Tomato	nucleus	22.74	22.0
Solyc11g045640.1.1	Tomato	nucleus	12.4	21.92
Os12t0616400-01	Rice	cytosol, nucleus, peroxisome	11.63	21.63
Solyc03g115010.1.1	Tomato	plastid	18.35	20.82
Solyc12g014140.1.1	Tomato	nucleus	19.12	18.78
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	11.37	18.26
Solyc02g077250.2.1	Tomato	nucleus	15.5	16.95
Solyc03g045030.1.1	Tomato	nucleus	8.01	16.94
Solyc03g119770.2.1	Tomato	nucleus	14.73	16.47
Solyc04g006980.1.1	Tomato	nucleus	13.95	14.4
Solyc06g069240.1.1	Tomato	nucleus	14.73	14.04
Solyc05g009900.1.1	Tomato	nucleus	12.66	13.88
Solyc10g008780.1.1	Tomato	nucleus	16.28	10.82

Protein Annotations

MapMan:15.5.19	InterPro:CYC/TB1_R_domain	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	InterPro:IPR017888	UniProt:K4CKJ0	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370
PANTHER:PTHR31072	PANTHER:PTHR31072:SF2	EnsemblPlantsGene:Solyc08g048390.1	EnsemblPlants:Solyc08g048390.1.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI000276C867	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:13139274..13140437

Molecular Weight (calculated)

42949.6 Da

IEP (calculated)

6.428

GRAVY (calculated)

-0.794

Length

387 amino acids

Sequence
(BLAST)

001: MEEIRTDECK FPRMSNKEDE QYQQYDVDDV GEVKKSSGLG GIVKFYGRPS SRIVRVSRAS GGKDRHSKVL TSKGLRDRRV RLSVNTAIQF YDLQDRLGCD
101: QPSKAVEWLL KAAAPSIAEL PPLEAFPDTL QLSDEKKSSE QGFDSADVEM DDDLHYNQQQ QPCCSNSETS KGSGLSLSRS DSRLKARERA KERATEKEKE
201: KENKSCIVGQ HHQNMHPGSS FTELLTGGMS DNNTSPNGGS IHQNTARQWS TNPLEYFTSG LLGPSATRGI DNQIYLGNPL QPLRPMFSIT GEHRAELQNF
301: PFGGDNLVPG VTSSNTSTNY NEYNLNFSIS SSSSSGFNRG TLQSNSSSTL PHYQRFSPTD GSYLGSTTEY DARLHLFYGA CVNLFFL

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.