Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P02530_001 | Banana | nucleus | 73.16 | 72.77 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 70.26 | 69.9 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 69.21 | 69.58 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 69.74 | 69.37 |
| OQU89064 | Sorghum | cytosol | 11.58 | 55.0 |
| Os03t0785800-01 | Rice | nucleus | 42.89 | 45.66 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 47.37 | 43.27 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 50.26 | 43.02 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 46.05 | 42.48 |
| Os07t0152000-01 | Rice | nucleus | 49.74 | 42.47 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 47.37 | 42.45 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 41.05 | 40.94 |
| Zm00001d034353_P001 | Maize | cytosol | 41.32 | 40.67 |
| PGSC0003DMT400051253 | Potato | nucleus | 36.58 | 40.64 |
| Zm00001d018806_P001 | Maize | nucleus | 46.58 | 40.5 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 31.32 | 40.34 |
| AT4G18390.1 | Thale cress | nucleus | 38.68 | 40.27 |
| Zm00001d007868_P001 | Maize | nucleus | 46.58 | 40.23 |
| KXG37409 | Sorghum | cytosol | 41.05 | 40.1 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 31.05 | 40.0 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 31.05 | 39.73 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 31.32 | 39.67 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 41.32 | 39.25 |
| AT1G30210.1 | Thale cress | nucleus | 33.16 | 38.89 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 46.84 | 38.61 |
| Solyc08g048390.1.1 | Tomato | nucleus | 38.95 | 38.24 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 40.26 | 38.15 |
| KRH42567 | Soybean | nucleus | 46.05 | 37.39 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 39.74 | 37.38 |
| KRH11155 | Soybean | nucleus | 50.0 | 37.18 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 39.47 | 37.04 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 28.95 | 36.42 |
| KRH58674 | Soybean | nucleus | 45.53 | 36.19 |
| KRH21093 | Soybean | nucleus | 50.53 | 36.09 |
| Zm00001d022256_P001 | Maize | nucleus | 29.47 | 34.67 |
| Solyc08g048370.2.1 | Tomato | cytosol | 28.95 | 33.74 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 47.11 | 32.66 |
| CDX78849 | Canola | nucleus, plastid | 19.47 | 30.96 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 19.47 | 30.96 |
| GSMUA_Achr10P... | Banana | nucleus | 19.47 | 29.72 |
| GSMUA_Achr8P19990_001 | Banana | nucleus | 18.68 | 29.46 |
| GSMUA_Achr6P14430_001 | Banana | nucleus | 18.42 | 29.17 |
| GSMUA_Achr3P31370_001 | Banana | nucleus | 18.68 | 27.2 |
| Os12t0616400-01 | Rice | cytosol, nucleus, peroxisome | 14.74 | 26.92 |
| GSMUA_Achr10P... | Banana | nucleus | 16.32 | 23.4 |
| GSMUA_Achr4P32850_001 | Banana | nucleus | 20.0 | 22.16 |
| GSMUA_Achr7P13980_001 | Banana | nucleus | 21.05 | 21.74 |
| GSMUA_Achr6P27420_001 | Banana | nucleus | 17.11 | 21.74 |
| GSMUA_Achr3P03540_001 | Banana | nucleus | 21.84 | 20.65 |
| GSMUA_Achr5P06660_001 | Banana | mitochondrion, plastid | 22.63 | 18.26 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 10.0 | 14.56 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 11.84 | 13.64 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 10.26 | 12.04 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G31520_001 | EnsemblPlants:GSMUA_Achr4P31520_001 |
| EnsemblPlants:GSMUA_Achr4T31520_001 | InterPro:IPR017887 | UniProt:M0STR4 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000294E64C | SEG:seg | : |
Description
Putative Transcription factor PCF6 [Source:GMGC_GENE;Acc:GSMUA_Achr4G31520_001]
Coordinates
chr4:-:28701159..28702490
Molecular Weight (calculated)
40821.0 Da
IEP (calculated)
7.841
GRAVY (calculated)
-0.757
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MELEESNHAS KRFRVVGNGS QTAKIGRKEH REDDEEGRER KGRGGDDANG TAPWEHHLSS RIFRVSRASG GKDRHSKVHT ARGVRDRRVR LSVSTAIQFY
101: DLQDRLGYDQ PSKAIEWLIK AAAAAISELP PLDGFPKPPY PNMVETMKAN PDTESSYNQQ QQHMSTKSGC SSTSETSKGS VLSLSRLNPQ TSFTELLTGS
201: GGGGGDVSNN ANATTVAAGA ENTPQESHQH PPTFSSQSHF GNSSPMGMLP FNIATTGDHP EMQQLFLQDN LFPISAVAAT GDYNLSFSIS SGLAGFSRGT
301: LQSNSSAQLP QQHHHNHNHL PRLSSTVDGS NLQFFGAAAG SARAGAGAEN QYPAVCDGRL QLCYGGDGYR HSDLKGKGKS
101: DLQDRLGYDQ PSKAIEWLIK AAAAAISELP PLDGFPKPPY PNMVETMKAN PDTESSYNQQ QQHMSTKSGC SSTSETSKGS VLSLSRLNPQ TSFTELLTGS
201: GGGGGDVSNN ANATTVAAGA ENTPQESHQH PPTFSSQSHF GNSSPMGMLP FNIATTGDHP EMQQLFLQDN LFPISAVAAT GDYNLSFSIS SGLAGFSRGT
301: LQSNSSAQLP QQHHHNHNHL PRLSSTVDGS NLQFFGAAAG SARAGAGAEN QYPAVCDGRL QLCYGGDGYR HSDLKGKGKS
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.