Factsheet for GSMUA_Achr10P03420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P17940_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31340_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr10P...	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P03390_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr9P25190_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P31340_001	AT4G14700.1	18818695
AT5G13060.1	GSMUA_Achr2P17940_001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	61.27	52.48
GSMUA_Achr2P00100_001	Banana	cytosol	50.29	46.77
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	50.29	35.08
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	64.74	25.81
GSMUA_Achr10P...	Banana	endoplasmic reticulum	57.8	25.64
GSMUA_Achr10P...	Banana	cytosol	27.17	23.5
CDY51336	Canola	mitochondrion	31.21	23.08
GSMUA_Achr2P00090_001	Banana	cytosol	20.81	19.25
VIT_05s0020g03020.t01	Wine grape	cytosol	66.47	16.13
CDY15719	Canola	plastid	12.72	15.83
KRH77872	Soybean	cytosol	63.58	15.58
GSMUA_Achr9P17600_001	Banana	cytosol	66.47	15.46
KRH35552	Soybean	cytosol	63.01	15.42
KRH27617	Soybean	cytosol	63.01	15.4
KRG91259	Soybean	cytosol	61.85	15.13
PGSC0003DMT400051860	Potato	cytosol	60.12	14.67
Solyc06g084250.2.1	Tomato	cytosol	58.96	14.47
VIT_07s0104g00020.t01	Wine grape	cytosol	58.96	14.47
CDX92539	Canola	cytosol	58.38	14.41
PGSC0003DMT400033530	Potato	cytosol	58.96	14.41
Solyc09g065210.2.1	Tomato	cytosol	58.96	14.41
AT5G19330.1	Thale cress	cytosol	58.96	14.37
Bra002228.1-P	Field mustard	nucleus	59.54	14.23
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	57.23	13.85
CDX88895	Canola	cytosol, nucleus, plastid	57.23	13.85
Bra023389.1-P	Field mustard	plastid	48.55	12.9
Bra030036.1-P	Field mustard	plastid	13.29	12.78
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	50.29	11.8
CDX91149	Canola	cytosol, mitochondrion	49.13	11.66
KRH67208	Soybean	cytosol	47.4	11.63
Bra008860.1-P	Field mustard	plastid	47.4	11.6
CDX69674	Canola	cytosol	47.4	11.6
CDX85673	Canola	plastid	49.13	11.6
KRG95533	Soybean	cytosol	46.82	11.36
CDX97221	Canola	cytosol, mitochondrion	46.24	11.32
GSMUA_Achr2P00150_001	Banana	cytosol, extracellular, plastid	4.05	11.11
GSMUA_Achr10P...	Banana	cytosol	5.2	10.84
CDY13990	Canola	nucleus	57.23	7.83
GSMUA_Achr2P00050_001	Banana	extracellular, plasma membrane	5.2	6.21
PGSC0003DMT400051857	Potato	endoplasmic reticulum	6.36	6.01
GSMUA_Achr2P00070_001	Banana	extracellular	4.62	5.23
CDX70871	Canola	cytosol	6.94	4.49
GSMUA_Achr10P...	Banana	extracellular	2.31	3.85
GSMUA_Achr10P...	Banana	cytosol	1.16	2.13
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	1.16	0.71

Protein Annotations

EnsemblPlants:GSMUA_Achr10P03420_001	EnsemblPlants:GSMUA_Achr10T03420_001	EnsemblPlantsGene:GSMUA_Achr10G03420_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	PFscan:PS50176	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0002956067
UniProt:M0RF19	MapMan:35.1	:	:	:	:

Description

ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G03420_001]

Coordinates

chr10:-:11260198..11265644

Molecular Weight (calculated)

19417.6 Da

IEP (calculated)

7.598

GRAVY (calculated)

-0.170

Length

173 amino acids

Sequence
(BLAST)

001: MKLKDGYMIS SSQPIHEYRG FAVRHLLLRQ DSHNQAGIVY NGGLVPLLKL LDSKNGCLQH NAAFALYGIA ENEDNVSDFI KVGGVQKLQD SEFINQATKD
101: CVAKTIKRLE EKINGRVLNH LLYLMRVGEK AVQRRIALAL AHLCSPEDQR TIFIDDDGLD FLLELLGSIN LKQ

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.