Factsheet for Bra008860.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008604.1-P
Bra016291.1-P
Bra018272.1-P
Bra022834.1-P
Bra024680.1-P
Bra029471.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	Bra016291.1-P	AT1G26830.1	15659098
AT5G13060.1	Bra024680.1-P	AT1G26830.1	15659098
AT5G13060.1	Bra018272.1-P	AT2G31270.1	18818695
AT5G13060.1	Bra022834.1-P	AT2G31270.1	18818695
AT5G13060.1	Bra029471.1-P	AT4G14700.1	18818695
AT5G13060.1	Bra008604.1-P	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69674	Canola	cytosol	95.62	95.62
Bra023389.1-P	Field mustard	plastid	77.93	84.64
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	82.18	78.83
Solyc09g065210.2.1	Tomato	cytosol	52.9	52.82
Solyc06g084250.2.1	Tomato	cytosol	52.33	52.48
VIT_07s0104g00020.t01	Wine grape	cytosol	52.05	52.2
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	52.19	51.61
Bra002228.1-P	Field mustard	nucleus	51.91	50.69
EES19490	Sorghum	nucleus	51.77	49.13
HORVU1Hr1G062160.1	Barley	cytosol	49.79	48.89
GSMUA_Achr9P17600_001	Banana	cytosol	51.06	48.52
TraesCS1A01G249400.1	Wheat	cytosol	49.65	47.95
TraesCS1D01G248900.1	Wheat	cytosol	49.79	47.44
TraesCS1B01G260100.1	Wheat	cytosol	49.79	47.44
GSMUA_Achr10P...	Banana	cytosol	11.6	47.4
Bra030036.1-P	Field mustard	plastid	12.02	47.22
KRG95533	Soybean	cytosol	47.52	47.12
KRH67208	Soybean	cytosol	46.82	46.95
Os05t0398100-01	Rice	cytosol	14.85	46.88
GSMUA_Achr10P...	Banana	endoplasmic reticulum	25.46	46.15
Zm00001d038134_P001	Maize	cytosol	51.63	45.91
Zm00001d010341_P002	Maize	cytosol	48.94	45.11
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	15.56	44.35
GSMUA_Achr2P00100_001	Banana	cytosol	11.6	44.09
GSMUA_Achr10P...	Banana	cytosol	12.16	43.0
GSMUA_Achr2P00090_001	Banana	cytosol	11.32	42.78
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	11.03	38.61
PGSC0003DMT400051857	Potato	endoplasmic reticulum	9.19	35.52
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	20.79	33.87
Bra002227.1-P	Field mustard	cytosol	7.36	9.65

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
InterPro:BTB/POZ_dom	EnsemblPlantsGene:Bra008860	EnsemblPlants:Bra008860.1	EnsemblPlants:Bra008860.1-P	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	UniProt:M4CXB3	PFAM:PF00514
PFAM:PF00651	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf
SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI0002543B54	SEG:seg

Description

AT5G13060 (E=3e-228) ABAP1 | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1); protein binding

Coordinates

chrA10:-:14166466..14170380

Molecular Weight (calculated)

78405.9 Da

IEP (calculated)

6.970

GRAVY (calculated)

-0.079

Length

707 amino acids

Sequence
(BLAST)

001: MKILQTPQLK STVQSSTHSS SPTAMESQQK RQRKTRLAGR NLRRKLSRET DAASSIVMQI TEVEEDEEAD LVASIRRHVE VLNSSFSDRE AVKEAAAAIS
101: SLAKIDENVE MMVENGVIPA LVRYLESPWS LAINPNVPKS CDHKLEKDCA VSLGLIAAIQ PGYQQLIVDA GAIVPTVKLL KRRGVCLGCM EANAVIRRAA
201: DIITNIAHDN PRIKTNIRVE GGIPPLVELL NFPDVKVQRA AAGALRTVSF RNDDNKNQIG AIGNLVHSSP DIKKDVIRAG ALQPVISLLS STCLETQREA
301: ALLIGQFASP DSDCKVHIAQ RGAITPLIKM LESSDEQVME MSAFALGRLA QDTHNQAGIG QRGGIISLLN LLDVNTGSVQ HNAAFALYGL ADNEENLADF
401: IKAGGIQRLQ DDNFTVQPTR DCVVRTLKRL ENKVHGPVLN QLLYLMRTTE KPIQMRIALA LAHLCDPKDG KLIFIDNNGV EFLLELLYLS GMKQQKYSSR
501: ALFELARKAT SFAPEDSAPS SPTQRVFLGA EFVNNPTLSD VTFLVDGKQF YAHKICLVAS SDIFRAMFDG LYKERNAQNV EIPNITWEVF ELMMRFIYTG
601: RIDITKHLAQ ELLVAADQYL IEGLKRLCEY TIAQDICVDN IPLMYDLADT FNASALRRAC TLYVLEHYTK LSSETWFPMF IKKIIPEIRT YITDILTRPV
701: QASSTVV

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.