Factsheet for Bra022834.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000520.1-P
Bra008860.1-P
Bra018272.1-P
Bra018641.1-P
Bra022834.1-P
Bra023389.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	Bra018641.1-P	AT1G08260.1	22773747
AT2G31270.1	Bra018272.1-P	AT2G31270.1	22773747
AT2G31270.1	Bra022834.1-P	AT2G31270.1	22773747
AT2G31270.1	Bra008860.1-P	AT5G13060.1	18818695
AT2G31270.1	Bra023389.1-P	AT5G13060.1	18818695
AT2G31270.1	Bra000520.1-P	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84793	Canola	nucleus, plastid	99.09	99.09
Bra018272.1-P	Field mustard	nucleus	73.87	69.34
AT2G31270.1	Thale cress	nucleus, plastid	69.51	67.08
VIT_07s0005g03090.t01	Wine grape	nucleus	41.56	39.69
Bra014795.1-P	Field mustard	cytosol	25.23	39.49
Bra014797.1-P	Field mustard	cytosol, plastid	31.58	37.83
Solyc06g008510.2.1	Tomato	nucleus, plastid	38.84	36.71
PGSC0003DMT400028257	Potato	nucleus, plastid	38.66	36.54
Solyc01g006140.2.1	Tomato	nucleus	36.3	34.97
GSMUA_Achr10P...	Banana	nucleus	33.94	34.31
KRH32170	Soybean	plastid	37.02	34.23
KRH19542	Soybean	nucleus	36.3	32.31
HORVU2Hr1G003370.11	Barley	cytosol	26.86	31.62
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	25.05	31.58
EER89201	Sorghum	nucleus	32.85	31.48
Zm00001d045354_P002	Maize	nucleus	32.67	31.41
TraesCS2D01G023000.1	Wheat	cytosol, plastid	30.13	30.74
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	31.22	29.25
TraesCS2A01G022200.1	Wheat	plastid	30.49	29.07
TraesCS2B01G030600.1	Wheat	plastid	30.13	28.62
HORVU4Hr1G047140.6	Barley	plastid	10.89	27.52
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	19.06	27.27
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	32.12	18.53

Protein Annotations

EnsemblPlants:Bra022834.1	EnsemblPlants:Bra022834.1-P	EnsemblPlantsGene:Bra022834	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C
InterPro:WH_DNA-bd_sf	PANTHER:PTHR28637	PANTHER:PTHR28637:SF6	PFAM:PF08839	PFAM:PF16679	SEG:seg
SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI00025402B8	UniProt:M4E234	MapMan:13.2.1.3	:

Description

AT2G31270 (E=8e-121) ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding

Coordinates

chrA03:+:7326861..7329014

Molecular Weight (calculated)

61176.5 Da

IEP (calculated)

9.098

GRAVY (calculated)

-0.544

Length

551 amino acids

Sequence
(BLAST)

001: MSAPGSSRSI PFKSKKRLFD SPRSKSQTGN PDSSSSVPFP TPEKPPESTI TRSSNRSAAL SEKEVPQAAG SCRRSEDPLG KVSSARIQLV FSSSSSSKRV
101: SNTNKIAEKE KLPEKYETLG KFFDALDSSI VLSKLRGSKP TFSNISGKIE HLTERRFCYS HLAQIKHLLP EAIEIKRVLV HDETTRCMKP DLHVSLNADA
201: VEDHDKSKKI SLRKVFRTRL ADFVKAHPQG DEVPEEPLPE LFSRRKLNEN SKDEVKSFSS VMEEMASIPA AKLISSFMKV PSTPVKPASS PARPALSKIN
301: LAPTPVKAVS TPASVPSTPA KIDSAPAFVA STPPEFASTP ARLFSRSLEA RLVKRSSDDT NLDDVTTDQP FKLARRSSLS SSRSLNFDSY TEDVTDVDED
401: IDQVLVQDAS SDDEILSILP DNLREEIKEQ ERKAIEDSNP AISEAKRRRK MIACLPKFFN VIHYLVQSIR RWVITKEELV HKIIAGHSDI TDRREVEEQL
501: VLMQELVPEW ISEKRSSSGD VLVCINKVAS PQTIRSSLEE ENKKAMATPL S

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.