Factsheet for Bra000520.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	98.47	98.66
AT5G22110.1	Thale cress	nucleus	83.17	82.7
VIT_17s0000g04830.t01	Wine grape	mitochondrion	67.69	67.17
PGSC0003DMT400079711	Potato	mitochondrion	66.16	65.41
Solyc03g098250.2.1	Tomato	nucleus	65.97	65.22
Os05t0160800-01	Rice	cytosol, nucleus	59.66	61.9
KRH38973	Soybean	cytosol	35.76	61.51
EES15109	Sorghum	mitochondrion	62.52	61.35
GSMUA_Achr3P07710_001	Banana	mitochondrion	61.95	61.13
TraesCS3B01G137500.1	Wheat	mitochondrion	62.14	60.98
TraesCS3D01G120300.1	Wheat	mitochondrion	62.14	60.98
TraesCS3A01G118400.1	Wheat	mitochondrion	61.95	60.79
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	43.79	60.42
HORVU3Hr1G021900.1	Barley	cytosol	8.99	59.49
KRH09498	Soybean	mitochondrion	63.29	59.0
HORVU3Hr1G021820.1	Barley	plastid	62.33	58.84
Zm00001d031750_P001	Maize	mitochondrion	19.31	46.98

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.8.60	MapMan:13.2.3.3.2	EnsemblPlantsGene:Bra000520	EnsemblPlants:Bra000520.1
EnsemblPlants:Bra000520.1-P	InterPro:DNA_pol_alpha/epsilon_bsu	InterPro:DNA_pol_e_bsu_N	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006261	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008622	GO:GO:0009058
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0051781	GO:GO:0070182	GO:GO:0071897	UniProt:M4C8J2	PFAM:PF04042	PFAM:PF12213
PIRSF:PIRSF000799	InterPro:POLE2	PANTHER:PTHR12708	UniParc:UPI0002540033	:	:

Description

AT5G22110 (E=5e-252) ATDPB2, CYL2 | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding

Coordinates

chrA03:-:11549398..11552180

Molecular Weight (calculated)

58977.2 Da

IEP (calculated)

5.006

GRAVY (calculated)

-0.228

Length

523 amino acids

Sequence
(BLAST)

001: MSSMRKKIQK KFKTRGYSLK IDALNSILAF ADQFPGDDEG EAIDLLLDHL QTENLNSSVV DAESVQGVIN LLLGANDAAE EPTSNASSLA FIDAFLVPKY
101: RYDSVKKQFI EHTSSLPVHG EASSKTEVYR ERFMLLLQRV SRAELFSMPA FDAEKSQFDN SEISPIQSLV VQIGRKWVMG VISQLEDGHF YLEDLSASVE
201: IDFQYKITTG FFTENTIILA EGEMQNGIFQ VITCGFPPLE DRDKTLNTHS GYDFFGHGML TKDDRIRLAD LERQAVNETF VILSDIWLDD EEKVLGKLEK
301: VLDGFESVEV VPSLFVFMGN FSSHPCNSSF GSYPRLRKQF GKLGRMIGNH PRLKESSRFL FIPGPDDAGP STVLPRCGLP NSLTEELRDV IPNAIFSSNP
401: CRVKFYNQEI VFFRKNLLYQ MRRSCLIPPS AEETDDPFQH LVYTITHQSH LCPLPLMVQP IIWNYDHSLR LYPTPHTIVL GDTSEQKVCK FGGTTCFNPG
501: SFSTDSTFVA YRPSTQEVEL SGL

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.