CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000520.1-P	Field mustard	nucleus	98.66	98.47
CDY31165	Canola	cytosol	97.7	97.89
AT5G22110.1	Thale cress	nucleus	83.14	82.51
VIT_17s0000g04830.t01	Wine grape	mitochondrion	67.62	66.98
PGSC0003DMT400079711	Potato	mitochondrion	66.28	65.41
Solyc03g098250.2.1	Tomato	nucleus	66.09	65.22
KRH38973	Soybean	cytosol	35.82	61.51
Os05t0160800-01	Rice	cytosol, nucleus	59.39	61.51
EES15109	Sorghum	mitochondrion	62.45	61.16
GSMUA_Achr3P07710_001	Banana	mitochondrion	62.07	61.13
TraesCS3B01G137500.1	Wheat	mitochondrion	62.26	60.98
TraesCS3D01G120300.1	Wheat	mitochondrion	62.26	60.98
TraesCS3A01G118400.1	Wheat	mitochondrion	62.07	60.79
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	43.68	60.16
HORVU3Hr1G021900.1	Barley	cytosol	9.0	59.49
KRH09498	Soybean	mitochondrion	63.22	58.82
HORVU3Hr1G021820.1	Barley	plastid	62.07	58.48
Zm00001d031750_P001	Maize	mitochondrion	19.16	46.51

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.8.60	MapMan:13.2.3.3.2	GO:A0A078D2B5	EnsemblPlants:CDX83257
ProteinID:CDX83257	ProteinID:CDX83257.1	InterPro:DNA_pol_alpha/epsilon_bsu	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0008150
GO:GO:0008152	GO:GO:0008622	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00138808001
PFAM:PF04042	PIRSF:PIRSF000799	InterPro:POLE2	PANTHER:PTHR12708	UniParc:UPI0004EDB6EB	:

Description

BnaA03g22490D

Coordinates

chrLK031832:+:689253..692464

Molecular Weight (calculated)

58874.1 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.214

Length

522 amino acids

Sequence
(BLAST)

001: MSSMRKKIQK KFKTRGYSLK IDALNSILAF ADQFPGDDEG EAIDLLLDHL QMENLNSSVV DAESVQGVIN LLLGANDAAE EPASNASSLA FIDAFLVPKY
101: RYDSVKKQFI EHTSSLPVHG EASSKTEVYR ERFMLLLQRV SRAELFSMPA FDADKSQFEN SEISPIQSLV VQIGRKWVMG VISQLEDGHF YLEDLSASVE
201: IDFQYKITTG FFTENTIILA EGEMQNGIFQ VITCGFPPLE DRDKTLNTHS GYDFFGNGML TKEDRIRFAD LERQAVNETF VILSDIWLDD EEVLGKLEKV
301: LDGFESVEVV PSLFVFMGNF SSHPCNSSFG SYPRLRKQFG KLGRMIGNHP RLKESSRFLF IPGPDDAGPS TVLPRCGLPN SLTEELRDVI PNAIFSSNPC
401: RVKFYNQEIV FFRKNLLYQM RRSCLIPPSA EETDDPFQHL VYTITHQSHL CPLPLMVQPI IWNYDHSLRL YPTPHTIVLG DTSEQKVCKF GGTTCFNPGS
501: FSTDSTFVAY RPSTQEVELS GL

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.