CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	97.89	97.7
AT5G22110.1	Thale cress	nucleus	83.88	83.08
VIT_17s0000g04830.t01	Wine grape	mitochondrion	68.33	67.55
PGSC0003DMT400079711	Potato	mitochondrion	66.99	65.97
Solyc03g098250.2.1	Tomato	nucleus	66.79	65.78
Os05t0160800-01	Rice	cytosol, nucleus	60.46	62.5
EES15109	Sorghum	mitochondrion	63.34	61.91
TraesCS3B01G137500.1	Wheat	mitochondrion	62.96	61.54
TraesCS3D01G120300.1	Wheat	mitochondrion	62.96	61.54
KRH38973	Soybean	cytosol	35.89	61.51
TraesCS3A01G118400.1	Wheat	mitochondrion	62.76	61.35
GSMUA_Achr3P07710_001	Banana	mitochondrion	62.38	61.32
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	44.34	60.95
HORVU3Hr1G021900.1	Barley	cytosol	9.21	60.76
KRH09498	Soybean	mitochondrion	64.11	59.54
HORVU3Hr1G021820.1	Barley	plastid	63.15	59.39
Zm00001d031750_P001	Maize	mitochondrion	19.39	46.98

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	MapMan:13.2.3.3.2	GO:A0A078GXI3	UniProt:A0A078GXI3	EnsemblPlants:CDY31165
ProteinID:CDY31165	ProteinID:CDY31165.1	ncoils:Coil	InterPro:DNA_pol_alpha/epsilon_bsu	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261
GO:GO:0008150	GO:GO:0008152	GO:GO:0008622	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0071897	EnsemblPlantsGene:GSBRNA2T00047255001	PFAM:PF04042	PIRSF:PIRSF000799	InterPro:POLE2
PANTHER:PTHR12708	UniParc:UPI0004EF2C3A	:	:	:	:

Description

BnaC03g47260DDNA polymerase epsilon subunit [Source:UniProtKB/TrEMBL;Acc:A0A078GXI3]

Coordinates

chrLK032268:+:16956..19987

Molecular Weight (calculated)

58824.2 Da

IEP (calculated)

5.006

GRAVY (calculated)

-0.216

Length

521 amino acids

Sequence
(BLAST)

001: MSMRKKIQKK FKTRGYSLKI DALNSILAFA DQFPGDDEGE AIDLLLDHLQ MENLNSSVVD AESVQGVINL LLGANDAAEE PTSNASSLAF IDAFLVPKYR
101: YDSVKKQFIE HTSSLPVHGE ASSKTQVYRE RFMLLLQRVS RAELFSMPAF DAEKSQFDNS EISPIQSLVV QIGRKWVMGV ISQLEDGHFY LEDLSASVEI
201: DFQHKITTGF FTENTIILAE GEMQNGIFQV ITCGFPPLED RDKTLNTHSG YDFFGNGMLT KEDRIRLADL ERQAVNETFV ILSDIWLDDE EVLGKLEKVL
301: DGFESVEVVP SLFVFMGNFS SHPCNLSFGS YPRLRKQFGK LGRMIGNHPR LKESSRFLFI PGPDDAGPST VLPRCGLPNS LTEELRDVIP NAIFSSNPCR
401: VKFYNQEIVF FRKDLLYQMR RSCLIPPSAE ETDDPFQHLV YTITHQSHLC PLPLMVQPII WNYDHSLRLY PTPHTIILGD KSEQKVCKFG GTTCFNPGSF
501: STDSTFVAYR PSTQEVELSG L

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.