Factsheet for VIT_17s0000g04830.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079711	Potato	mitochondrion	77.42	77.13
Solyc03g098250.2.1	Tomato	nucleus	77.42	77.13
Os05t0160800-01	Rice	cytosol, nucleus	69.07	72.22
GSMUA_Achr3P07710_001	Banana	mitochondrion	72.11	71.7
TraesCS3D01G120300.1	Wheat	mitochondrion	72.3	71.48
TraesCS3B01G137500.1	Wheat	mitochondrion	72.3	71.48
EES15109	Sorghum	mitochondrion	72.11	71.29
TraesCS3A01G118400.1	Wheat	mitochondrion	72.11	71.29
AT5G22110.1	Thale cress	nucleus	69.64	69.77
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	49.34	68.6
HORVU3Hr1G021820.1	Barley	plastid	72.11	68.59
CDY31165	Canola	cytosol	67.55	68.33
Bra000520.1-P	Field mustard	nucleus	67.17	67.69
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	66.98	67.62
KRH38973	Soybean	cytosol	38.52	66.78
HORVU3Hr1G021900.1	Barley	cytosol	9.87	65.82
KRH09498	Soybean	mitochondrion	69.26	65.06
Zm00001d031750_P001	Maize	mitochondrion	24.1	59.07

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.8.60	EntrezGene:100257823	wikigene:100257823	MapMan:13.2.3.3.2
ProteinID:CBI15355	ProteinID:CBI15355.3	UniProt:D7SIP4	InterPro:DNA_pol_alpha/epsilon_bsu	InterPro:DNA_pol_e_bsu_N	EMBL:FN594950
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008622	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0042276	GO:GO:0051781
GO:GO:0070182	GO:GO:0071897	EntrezGene:LOC100257823	wikigene:LOC100257823	PFAM:PF04042	PFAM:PF12213
PIRSF:PIRSF000799	InterPro:POLE2	PANTHER:PTHR12708	TIGR:TC61805	UniParc:UPI00015C9933	ArrayExpress:VIT_17s0000g04830
EnsemblPlantsGene:VIT_17s0000g04830	EnsemblPlants:VIT_17s0000g04830.t01	RefSeq:XP_002267181	RefSeq:XP_002267181.1	SEG:seg	:

Description

DNA polymerase epsilon subunit [Source:UniProtKB/TrEMBL;Acc:D7SIP4]

Coordinates

chr17:+:5206939..5213522

Molecular Weight (calculated)

59499.3 Da

IEP (calculated)

5.457

GRAVY (calculated)

-0.093

Length

527 amino acids

Sequence
(BLAST)

001: MGAATRKKVQ RKFKIRGYTL KVEALDEILS FLSHFQDAED EAIDLLLDEL ENESLKSSIL DKESVHRVVS LLLEAEAAVE ETPGAISTRS ALRIVDAFLM
101: SKFCYDPIKK IFYENTGRLA IHGDASAKSA LYRNRFLLLF QRLSRDQHFS KPAFDTEMSH FGSCEISPIQ SLIGQTGKRW VMGVISQLED GHFFLEDLTA
201: SLALLHQQYK ITTGFFSENT IIVAEGEMFL DGIFQVSTCG FPPLEDRDES LASLSGLDFF GGGTLTREET LRLAGLEKKA VNDMFVILSD VWLDNEETMG
301: KLATVLDGYE NVEVVPSLFI FMGNFCSHPC NLSFHSFSSL RLQFGKLGQM IASHPRLKEH SQFLFIPGPD DAGPSTVLPR CALPNYLTEE FKKYIPNAIF
401: SSNPCRIKFY TQEIVLFRQD LLYRMRRSCL VPPSPEETSD PFEHLVATIT HQSHLCPLPL SVQPIIWNYD HCLHLYPNPH TIVLGDRSEQ KAFKYTGIMC
501: FNPGSFSNES TFVAYRPCTQ EVELSAL

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.