Factsheet for GSMUA_Achr3P07710_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G120300.1	Wheat	mitochondrion	80.38	79.92
TraesCS3A01G118400.1	Wheat	mitochondrion	80.38	79.92
TraesCS3B01G137500.1	Wheat	mitochondrion	80.19	79.74
EES15109	Sorghum	mitochondrion	79.43	78.99
Os05t0160800-01	Rice	cytosol, nucleus	75.09	78.97
HORVU3Hr1G021820.1	Barley	plastid	80.0	76.53
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	52.64	73.61
VIT_17s0000g04830.t01	Wine grape	mitochondrion	71.7	72.11
HORVU3Hr1G021900.1	Barley	cytosol	10.38	69.62
PGSC0003DMT400079711	Potato	mitochondrion	69.25	69.38
Solyc03g098250.2.1	Tomato	nucleus	68.87	69.0
Zm00001d031750_P001	Maize	mitochondrion	27.74	68.37
AT5G22110.1	Thale cress	nucleus	63.02	63.5
KRH38973	Soybean	cytosol	35.85	62.5
CDY31165	Canola	cytosol	61.32	62.38
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	61.13	62.07
Bra000520.1-P	Field mustard	nucleus	61.13	61.95
KRH09498	Soybean	mitochondrion	60.0	56.68

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.8.60	MapMan:13.2.3.3.2	InterPro:DNA_pol_alpha/epsilon_bsu	InterPro:DNA_pol_e_bsu_N
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008622	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0051781	GO:GO:0070182	GO:GO:0071897
EnsemblPlantsGene:GSMUA_Achr3G07710_001	EnsemblPlants:GSMUA_Achr3P07710_001	EnsemblPlants:GSMUA_Achr3T07710_001	UniProt:M0SCN8	PFAM:PF04042	PFAM:PF12213
PIRSF:PIRSF000799	InterPro:POLE2	PANTHER:PTHR12708	UniParc:UPI000295C9D4	SEG:seg	:

Description

Putative DNA polymerase epsilon subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G07710_001]

Coordinates

chr3:-:5315118..5319820

Molecular Weight (calculated)

60084.3 Da

IEP (calculated)

5.999

GRAVY (calculated)

-0.095

Length

530 amino acids

Sequence
(BLAST)

001: MAAPSGSRKK VQRKFKLRGF TLKVDALEET LAYLARFPDA EDGYLDLLID DIDKQSLKSS ILDREAIRRV VSLLLNADAA VDPSAASTSS SFALRVIDAF
101: VIPRFRYDPI KNVFYEHTGK LPIHGDAGDK AALYRDRYQL LLQRIARDKF FSKPVFDTKM TESESCEITP IQSLIGCTGR RWIMGVISQL EEGQFYLEDL
201: SAALFLNLYH KITSGFFVEN TVVVVEGELL SNGIFQVNTC GFPPMEDRET SLALHMGLDF FGGDVLSTEE NFRLLGLEKK AVNDMFVVLS DVWLDNEETM
301: EKLAVVFDGY ESVEVVPSLF ILMGNFCSRP CNLAFYSYST LRMQFAKLGE MIASHPRLRE QSRFLFIPGP DDAGPSKVLP RCALPKYLTE ELQKHIPGAI
401: FRSNPCRIKF YTQEIVIFRQ DLLYRMRRSC LIPPSTAETS DYFQHLVATI THQSHLCPLP LTVQPIIWNY DHCLRLYPTP HTIVLGDRSE QKAFKYTGIT
501: CFNPGSFSND NTFAAYRPCT QEVELSALES

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.