Factsheet for Zm00001d031750_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15109	Sorghum	mitochondrion	95.81	38.65
TraesCS3D01G120300.1	Wheat	mitochondrion	87.91	35.46
TraesCS3A01G118400.1	Wheat	mitochondrion	87.44	35.27
TraesCS3B01G137500.1	Wheat	mitochondrion	87.44	35.27
HORVU3Hr1G021820.1	Barley	plastid	87.44	33.94
Os05t0160800-01	Rice	cytosol, nucleus	77.67	33.13
GSMUA_Achr3P07710_001	Banana	mitochondrion	68.37	27.74
VIT_17s0000g04830.t01	Wine grape	mitochondrion	59.07	24.1
PGSC0003DMT400079711	Potato	mitochondrion	56.28	22.87
Solyc03g098250.2.1	Tomato	nucleus	55.81	22.68
KRH09498	Soybean	mitochondrion	54.42	20.86
AT5G22110.1	Thale cress	nucleus	47.44	19.39
CDY31165	Canola	cytosol	46.98	19.39
Bra000520.1-P	Field mustard	nucleus	46.98	19.31
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	46.51	19.16
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	3.72	2.11
KRH38973	Soybean	cytosol	0.93	0.66
HORVU3Hr1G021900.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d031750_P001	EnsemblPlants:Zm00001d031750_T001	EnsemblPlantsGene:Zm00001d031750	Gene3D:1.10.8.60	InterPro:DNA_pol_e_bsu_N	KEGG:00230+2.7.7.7
KEGG:00240+2.7.7.7	PANTHER:PTHR12708	PFAM:PF12213	ProteinID:ONM03628.1	SEG:seg	UniParc:UPI000844D156
UniProt:A0A1D6KL61	MapMan:13.2.3.3.2	:	:	:	:

Description

DNA polymerase epsilon subunit B

Coordinates

chr1:+:200707269..200708767

Molecular Weight (calculated)

24103.7 Da

IEP (calculated)

5.405

GRAVY (calculated)

-0.159

Length

215 amino acids

Sequence
(BLAST)

001: MAAPSAATRR KLQRKFRLRG FTLKVDALEE AAAFLDRFPD AEDDALDLLL DELDKEPLQS SILDRDAVRR VVALLVEAEE ALDVASPAAT SARSALRVVD
101: AFLVPRFHYD PIKKVFYEHT GRLAVHGEAG DKASLYRDRY QVLLQRLSRD KYFSKPAFDT VATEHCSCEI TSVQSLIGCT GRRWIMGVIS QLEERQFYLE
201: DLTGAVPIDL SNAIS

Best Arabidopsis Sequence Match ( AT5G22110.2 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT VFISISNPAR NPPYN

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.