Factsheet for Zm00001d031751_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G021900.1	Barley	cytosol	15.57	74.68
Os05t0160800-01	Rice	cytosol, nucleus	82.06	61.71
KRH38973	Soybean	cytosol	49.34	61.51
EES15109	Sorghum	mitochondrion	84.96	60.41
TraesCS3D01G120300.1	Wheat	mitochondrion	81.53	57.97
TraesCS3A01G118400.1	Wheat	mitochondrion	81.53	57.97
TraesCS3B01G137500.1	Wheat	mitochondrion	81.53	57.97
HORVU3Hr1G021820.1	Barley	plastid	81.27	55.6
GSMUA_Achr3P07710_001	Banana	mitochondrion	73.61	52.64
VIT_17s0000g04830.t01	Wine grape	mitochondrion	68.6	49.34
PGSC0003DMT400079711	Potato	mitochondrion	65.7	47.07
Solyc03g098250.2.1	Tomato	nucleus	65.17	46.69
AT5G22110.1	Thale cress	nucleus	62.8	45.25
CDY31165	Canola	cytosol	60.95	44.34
Bra000520.1-P	Field mustard	nucleus	60.42	43.79
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	60.16	43.68
KRH09498	Soybean	mitochondrion	58.31	39.39
Zm00001d031750_P001	Maize	mitochondrion	2.11	3.72

Protein Annotations

MapMan:13.2.3.3.2	UniProt:A0A1D6KL62	InterPro:DNA_pol_alpha/epsilon_bsu	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0071897
ProteinID:ONM03629.1	PFAM:PF04042	PANTHER:PTHR12708	UniParc:UPI00084481E3	EnsemblPlantsGene:Zm00001d031751	EnsemblPlants:Zm00001d031751_P001
EnsemblPlants:Zm00001d031751_T001	:	:	:	:	:

Description

DNA polymerase epsilon subunit B

Coordinates

chr1:+:200708821..200711986

Molecular Weight (calculated)

42922.8 Da

IEP (calculated)

5.015

GRAVY (calculated)

0.025

Length

379 amino acids

Sequence
(BLAST)

001: MLCQGISSYF MCGFRDYRES ITTFLNIEHK ITSGFFVENT VIVAEGELLS NGIFQVNTCG FPPLEDREAS VSLLMGFDFF GGGVIPTEET LRLSSLEKKA
101: VNDMFVILSD VWLDNPEDVP LCYLVEKTME KLAVVLDGYD SVEVVPSLFV LMGNFCSRPC NLAFNSFEEL RFQFGKLGEM IAARSRLKEH SRFLFIPGPD
201: DAGPSKALPR CALPKYLIEE LQKHIPNSIF VSNPCSYALC YFEISLHNHM MYNGIGVKFY TQEIVFFRQD LLYRMRRSCL IPPTTEETSD PFEHLVATIT
301: HQSHLCPLPL TVQPIIWNYD HCLRLYPTPH TIVLGDKSEQ KAFKYTGITC FNPGSFANDS TFAAYRPCTK EVELSALEG

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.