Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38973 | Soybean | cytosol | 64.56 | 16.78 |
| Zm00001d031751_P001 | Maize | cytosol, nucleus, plastid | 74.68 | 15.57 |
| Os05t0160800-01 | Rice | cytosol, nucleus | 75.95 | 11.9 |
| HORVU3Hr1G021820.1 | Barley | plastid | 79.75 | 11.37 |
| EES15109 | Sorghum | mitochondrion | 75.95 | 11.26 |
| GSMUA_Achr3P07710_001 | Banana | mitochondrion | 69.62 | 10.38 |
| PGSC0003DMT400079711 | Potato | mitochondrion | 67.09 | 10.02 |
| Solyc03g098250.2.1 | Tomato | nucleus | 67.09 | 10.02 |
| VIT_17s0000g04830.t01 | Wine grape | mitochondrion | 65.82 | 9.87 |
| KRH09498 | Soybean | mitochondrion | 67.09 | 9.45 |
| AT5G22110.1 | Thale cress | nucleus | 62.03 | 9.32 |
| CDY31165 | Canola | cytosol | 60.76 | 9.21 |
| CDX83257 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 59.49 | 9.0 |
| Bra000520.1-P | Field mustard | nucleus | 59.49 | 8.99 |
| Zm00001d031750_P001 | Maize | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G021900.1 | EnsemblPlantsGene:HORVU3Hr1G021900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003887 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0071897 | InterPro:DNA_pol_alpha/epsilon_bsu |
| PANTHER:PTHR12708 | PFAM:PF04042 | UniParc:UPI000B469922 | UniProt:A0A287KE37 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr3H:-:75189689..75190464
Molecular Weight (calculated)
9085.4 Da
IEP (calculated)
10.328
GRAVY (calculated)
-0.111
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MIASRTRLKE HSRFLFIPGP DDAGPSKALP RCALPKYLIE ELQKHIPNAI FVSNPCRSKH TIHVIFCRII IKNLMYEAK
001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL
Arabidopsis Description
DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.