Factsheet for HORVU3Hr1G021820.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G120300.1	Wheat	mitochondrion	95.31	99.06
TraesCS3B01G137500.1	Wheat	mitochondrion	95.13	98.87
TraesCS3A01G118400.1	Wheat	mitochondrion	95.13	98.87
EES15109	Sorghum	mitochondrion	88.63	92.12
Os05t0160800-01	Rice	cytosol, nucleus	83.75	92.06
Zm00001d031750_P001	Maize	mitochondrion	33.94	87.44
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	55.6	81.27
GSMUA_Achr3P07710_001	Banana	mitochondrion	76.53	80.0
HORVU3Hr1G021900.1	Barley	cytosol	11.37	79.75
VIT_17s0000g04830.t01	Wine grape	mitochondrion	68.59	72.11
PGSC0003DMT400079711	Potato	mitochondrion	65.7	68.81
Solyc03g098250.2.1	Tomato	nucleus	65.16	68.24
AT5G22110.1	Thale cress	nucleus	60.47	63.69
CDY31165	Canola	cytosol	59.39	63.15
Bra000520.1-P	Field mustard	nucleus	58.84	62.33
KRH38973	Soybean	cytosol	34.12	62.17
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	58.48	62.07
KRH09498	Soybean	mitochondrion	60.65	59.89

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.8.60	MapMan:13.2.3.3.2	UniProt:A0A287KE72	InterPro:DNA_pol_alpha/epsilon_bsu
InterPro:DNA_pol_e_bsu_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0008150	GO:GO:0008152	GO:GO:0008622
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0071897	EnsemblPlantsGene:HORVU3Hr1G021820
EnsemblPlants:HORVU3Hr1G021820.1	PFAM:PF04042	PFAM:PF12213	PIRSF:PIRSF000799	InterPro:POLE2	PANTHER:PTHR12708
UniParc:UPI000B47F0E9	SEG:seg	:	:	:	:

Description

DNA polymerase epsilon subunit [Source:UniProtKB/TrEMBL;Acc:A0A287KE72]

Coordinates

chrchr3H:+:75101169..75107014

Molecular Weight (calculated)

62122.8 Da

IEP (calculated)

5.053

GRAVY (calculated)

-0.064

Length

554 amino acids

Sequence
(BLAST)

001: PKPQPTFPAT AIPSRLFPLS PMAAPSAAMR KKLQRKFRLR GFTLKVDALE EAAAFLARFP DAEDEALDLL LDELDKEPLK SSILDRDAVR RVVSLLVEAE
101: EAVDAASPSA TSVQSALRVV DSFVVPRFQY DPIKKVFYEH TGRLALHGEA GDKAALYRDR YQVLLQRLAR DKYFSKPAFE SVMTENDSCE ITSIQSLVGC
201: TGRRWIMGVI SQLEERQFYL EDLTGAVPID LANAKITSGF FVENTVIVAE GELLSNGIFQ VNTCGFPPLE DRATSLSLLM GLDFFGGGVI PTEEALRLSS
301: LENKSVNDMF VILSDVWLDS YETMEKLGVV LDGYESVEVV PSLFVLMGNF CSRPCNLAFN SFEELRLQFG KLGEMIASRT RLKEHSRFLF IPGPDDAGPS
401: KALPRCALPK YLIEELQKHI PNAIFVSNPC RVKFYTQEIV FFRQDLLYRM RRSCLIPPTT EETSDPFEHL VATITHQSHL CPLPLTVQPI IWNYDHCLRL
501: YPTPDMIVLA DKSEQKAFKY TGITCFNPGS FANDSTFAAY RPCTKEVELS ALES

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.