CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G021900.1	Barley	cytosol	16.78	64.56
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	61.51	49.34
VIT_17s0000g04830.t01	Wine grape	mitochondrion	66.78	38.52
Os05t0160800-01	Rice	cytosol, nucleus	62.83	37.9
PGSC0003DMT400079711	Potato	mitochondrion	64.47	37.05
Solyc03g098250.2.1	Tomato	nucleus	64.47	37.05
AT5G22110.1	Thale cress	nucleus	62.5	36.12
CDY31165	Canola	cytosol	61.51	35.89
GSMUA_Achr3P07710_001	Banana	mitochondrion	62.5	35.85
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	61.51	35.82
Bra000520.1-P	Field mustard	nucleus	61.51	35.76
EES15109	Sorghum	mitochondrion	62.17	35.46
TraesCS3A01G118400.1	Wheat	mitochondrion	61.84	35.27
TraesCS3B01G137500.1	Wheat	mitochondrion	61.84	35.27
TraesCS3D01G120300.1	Wheat	mitochondrion	61.84	35.27
HORVU3Hr1G021820.1	Barley	plastid	62.17	34.12
KRH09498	Soybean	mitochondrion	61.84	33.51
Zm00001d031750_P001	Maize	mitochondrion	0.66	0.93

Protein Annotations

MapMan:13.2.3.3.2	EMBL:ACUP02005901	InterPro:DNA_pol_alpha/epsilon_bsu	EnsemblPlantsGene:GLYMA_09G169100	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008622	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0042276	UniProt:K7LEE1	EnsemblPlants:KRH38973	ProteinID:KRH38973	ProteinID:KRH38973.1
PFAM:PF04042	PANTHER:PTHR12708	UniParc:UPI0002965CB7	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:39370055..39372536

Molecular Weight (calculated)

34353.0 Da

IEP (calculated)

4.932

GRAVY (calculated)

-0.129

Length

304 amino acids

Sequence
(BLAST)

001: MPCEEELFQV STCLPIDDLK VANSKGMNNF NFLLICGFPP LEDRDKSLEF LSGHDFLDGG IFTKEETIRL REMEKGTVND MFVILADIWL DNEEALRKLE
101: TVLDDFESVE VVPSLFVFMG NFSSKPCNRS FHSNSSLSDD YKSETRTALL FGKLGEMIAS HPRLKEHSKL LIIPGPDDAG PSTALPRCAL PNYLTEELQK
201: HIPHAIFSSN PFRVKFYTQE ILVATITHQS HLCPLPLTVQ PNIWNYDHCL YLYPTPHTIV LGDRSLWNAF KNTGITYFNT SSFSIDSTSV AYCPCSQEVK
301: LLGL

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.