CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031750_P001	Maize	mitochondrion	38.65	95.81
Os05t0160800-01	Rice	cytosol, nucleus	88.37	93.45
TraesCS3D01G120300.1	Wheat	mitochondrion	92.5	92.5
TraesCS3B01G137500.1	Wheat	mitochondrion	92.31	92.31
TraesCS3A01G118400.1	Wheat	mitochondrion	92.31	92.31
HORVU3Hr1G021820.1	Barley	plastid	92.12	88.63
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	60.41	84.96
GSMUA_Achr3P07710_001	Banana	mitochondrion	78.99	79.43
HORVU3Hr1G021900.1	Barley	cytosol	11.26	75.95
VIT_17s0000g04830.t01	Wine grape	mitochondrion	71.29	72.11
PGSC0003DMT400079711	Potato	mitochondrion	68.48	69.0
Solyc03g098250.2.1	Tomato	nucleus	67.92	68.43
AT5G22110.1	Thale cress	nucleus	63.23	64.07
CDY31165	Canola	cytosol	61.91	63.34
Bra000520.1-P	Field mustard	nucleus	61.35	62.52
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	61.16	62.45
KRH38973	Soybean	cytosol	35.46	62.17
KRH09498	Soybean	mitochondrion	62.66	59.54

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	MapMan:13.2.3.3.2	UniProt:C5YM64	InterPro:DNA_pol_alpha/epsilon_bsu	InterPro:DNA_pol_e_bsu_N
EnsemblPlants:EES15109	ProteinID:EES15109	ProteinID:EES15109.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006261	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008622	GO:GO:0009058
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0051781	GO:GO:0070182	GO:GO:0071897	PFAM:PF04042	PFAM:PF12213	PIRSF:PIRSF000799
InterPro:POLE2	PANTHER:PTHR12708	EnsemblPlantsGene:SORBI_3007G152900	UniParc:UPI00081AC394	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:58542822..58547517

Molecular Weight (calculated)

59782.7 Da

IEP (calculated)

5.048

GRAVY (calculated)

-0.075

Length

533 amino acids

Sequence
(BLAST)

001: MAAPSAATRR KLQRKFRLRG FTLKVDALEE AAAFMDRFPD AEDDALDLLL DELDKEPLQS SILDRDAVRR VVALLVEAEE ALDAASPAVT SARSALRVVD
101: AFLVPRFHYD PIKKVFYEHT GRLAVHGEAG DKASLYRDRY QVLLQRLARD KYFSKPAFDT VATEDSSCEI TSIQSLIGCT GRRWIMGVIS QLEERQFYLE
201: DLTGAVPIDL SNAKITSGFF VENTVIVAEG ELLSNGIFQV NTCGFPPLED REASVSLLMG LDFFGGGVIP SEEALRLSSL EKKAVNDMFV ILSDVWLDNP
301: ETMEKLAVVL DGYDSVEVVP SLFVLMGNFC SRPCNLAFNS FEELRFQFGK LGEMIAARSR LKEHSRFLFV PGPDDAGPSK ALPRCALPKY LIEELQKHIP
401: NAIFVSNPCR VKFYTQEIVF FRQDLLYRMR RSCLIPPTTE ETSDPFEHLV ATITHQSHLC PLPLTVQPII WNYDHCLRLY PTPHTIVLGD KSEQKAFKYT
501: GITCFNPGSF ANDSTFAAYR PCTKEVELSA LEG

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.