Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31165 | Canola | cytosol | 83.08 | 83.88 |
| Bra000520.1-P | Field mustard | nucleus | 82.7 | 83.17 |
| CDX83257 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 82.51 | 83.14 |
| VIT_17s0000g04830.t01 | Wine grape | mitochondrion | 69.77 | 69.64 |
| PGSC0003DMT400079711 | Potato | mitochondrion | 67.3 | 66.92 |
| Solyc03g098250.2.1 | Tomato | nucleus | 66.92 | 66.54 |
| Os05t0160800-01 | Rice | cytosol, nucleus | 61.79 | 64.48 |
| EES15109 | Sorghum | mitochondrion | 64.07 | 63.23 |
| TraesCS3B01G137500.1 | Wheat | mitochondrion | 63.88 | 63.04 |
| TraesCS3D01G120300.1 | Wheat | mitochondrion | 63.88 | 63.04 |
| GSMUA_Achr3P07710_001 | Banana | mitochondrion | 63.5 | 63.02 |
| TraesCS3A01G118400.1 | Wheat | mitochondrion | 63.69 | 62.85 |
| Zm00001d031751_P001 | Maize | cytosol, nucleus, plastid | 45.25 | 62.8 |
| KRH38973 | Soybean | cytosol | 36.12 | 62.5 |
| HORVU3Hr1G021900.1 | Barley | cytosol | 9.32 | 62.03 |
| HORVU3Hr1G021820.1 | Barley | plastid | 63.69 | 60.47 |
| KRH09498 | Soybean | mitochondrion | 63.5 | 59.54 |
| Zm00001d031750_P001 | Maize | mitochondrion | 19.39 | 47.44 |
Protein Annotations
| KEGG:00230+2.7.7.7 | KEGG:00240+2.7.7.7 | MapMan:13.2.3.3.2 | EntrezGene:832272 | ProteinID:AED92984.1 | EMBL:AK221646 |
| ArrayExpress:AT5G22110 | EnsemblPlantsGene:AT5G22110 | RefSeq:AT5G22110 | TAIR:AT5G22110 | RefSeq:AT5G22110-TAIR-G | EnsemblPlants:AT5G22110.1 |
| TAIR:AT5G22110.1 | Symbol:ATDPB2 | Unigene:At.45633 | EMBL:BT022108 | ProteinID:CAC34504.1 | InterPro:DNA_pol_alpha/epsilon_bsu |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003887 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0006261 | GO:GO:0006950 | GO:GO:0007049 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008622 | GO:GO:0009058 | GO:GO:0009790 |
| GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | GO:GO:0042276 |
| GO:GO:0051781 | GO:GO:0070182 | GO:GO:0071897 | RefSeq:NP_680197.2 | PFAM:PF04042 | PIRSF:PIRSF000799 |
| PO:PO:0000293 | PO:PO:0009009 | PO:PO:0020144 | PO:PO:0025074 | PO:PO:0025281 | InterPro:POLE2 |
| PANTHER:PTHR12708 | UniProt:Q500V9 | UniParc:UPI000050D3A7 | SEG:seg | : | : |
Description
DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
Coordinates
chr5:-:7330825..7334282
Molecular Weight (calculated)
59542.8 Da
IEP (calculated)
5.286
GRAVY (calculated)
-0.303
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.