Factsheet for Os05t0160800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15109	Sorghum	mitochondrion	93.45	88.37
TraesCS3D01G120300.1	Wheat	mitochondrion	92.26	87.24
TraesCS3B01G137500.1	Wheat	mitochondrion	92.06	87.05
TraesCS3A01G118400.1	Wheat	mitochondrion	92.06	87.05
HORVU3Hr1G021820.1	Barley	plastid	92.06	83.75
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	61.71	82.06
Zm00001d031750_P001	Maize	mitochondrion	33.13	77.67
HORVU3Hr1G021900.1	Barley	cytosol	11.9	75.95
GSMUA_Achr3P07710_001	Banana	mitochondrion	78.97	75.09
VIT_17s0000g04830.t01	Wine grape	mitochondrion	72.22	69.07
PGSC0003DMT400079711	Potato	mitochondrion	69.84	66.54
Solyc03g098250.2.1	Tomato	nucleus	69.25	65.97
KRH38973	Soybean	cytosol	37.9	62.83
AT5G22110.1	Thale cress	nucleus	64.48	61.79
CDY31165	Canola	cytosol	62.5	60.46
Bra000520.1-P	Field mustard	nucleus	61.9	59.66
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	61.51	59.39
KRH09498	Soybean	mitochondrion	62.7	56.33

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	MapMan:13.2.3.3.2	UniProt:A0A0P0WIA1	ProteinID:BAS92403.1	InterPro:DNA_pol_alpha/epsilon_bsu
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008622	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0042276	GO:GO:0051781
GO:GO:0070182	GO:GO:0071897	EnsemblPlantsGene:Os05g0160800	EnsemblPlants:Os05t0160800-01	PFAM:PF04042	PIRSF:PIRSF000799
InterPro:POLE2	PANTHER:PTHR12708	UniParc:UPI000393ADA1	SEG:seg	:	:

Description

Similar to DNA polymerase epsilon subunit 2. (Os05t0160800-01)

Coordinates

chr5:+:3580709..3585641

Molecular Weight (calculated)

56583.7 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.062

Length

504 amino acids

Sequence
(BLAST)

001: EAAAFLARFP DAEDDALDLL LDELDKEPLQ SSILDRDAVR RVVALLVEAD EAVDAASPAA TSARSALRVV DSFVVPRFHY DPIKKVFYEH TSRLAIHGEA
101: GDKAALYRDR YQVLLQRLAR DIYFSKPAFD TVMTEDDNCE ITSIQSLIGC TGRRWIMGVI SQLEERQFYL EDLTGAVPID LSNAKITSGF FVENTVIVAE
201: GELLSNGIFQ VNTCGFPPLE DREASLSMLM GLDFFGGGVI PTEETVRLST LEKKAMNDMF VILSDVWLDN YETMEKLGVV LDGYDSLEAV PSLFVLMGNF
301: CSRPCNLAFN SFEELRLQFG KLGEMIAARS RLKEHSRFLF IPGPDDAGPS KALPRCALPK YLTEELQKHI PNAIFVSNPC RVKFYTQEIV FFRQDLLYRM
401: RRSCLIPPTT EETSDPFEHL VATITHQSHL CPLPLTVQPI IWSYDHCLRL YPTPHTIVLG DKSDQKAFKY TGITCFNPGS FANDSTFAAY RPCTKEVELS
501: ALES

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.