CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g04830.t01	Wine grape	mitochondrion	65.06	69.26
HORVU3Hr1G021900.1	Barley	cytosol	9.45	67.09
PGSC0003DMT400079711	Potato	mitochondrion	61.85	65.6
Solyc03g098250.2.1	Tomato	nucleus	61.32	65.03
CDY31165	Canola	cytosol	59.54	64.11
AT5G22110.1	Thale cress	nucleus	59.54	63.5
TraesCS3A01G118400.1	Wheat	mitochondrion	60.25	63.41
Bra000520.1-P	Field mustard	nucleus	59.0	63.29
TraesCS3D01G120300.1	Wheat	mitochondrion	60.07	63.23
TraesCS3B01G137500.1	Wheat	mitochondrion	60.07	63.23
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	58.82	63.22
Os05t0160800-01	Rice	cytosol, nucleus	56.33	62.7
EES15109	Sorghum	mitochondrion	59.54	62.66
KRH38973	Soybean	cytosol	33.51	61.84
HORVU3Hr1G021820.1	Barley	plastid	59.89	60.65
GSMUA_Achr3P07710_001	Banana	mitochondrion	56.68	60.0
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	39.39	58.31
Zm00001d031750_P001	Maize	mitochondrion	20.86	54.42

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	EntrezGene:100784116	MapMan:13.2.3.3.2	UniProt:A0A0R0FTP5	EMBL:ACUP02010280
InterPro:DNA_pol_alpha/epsilon_bsu	EnsemblPlantsGene:GLYMA_16G218700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008622	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0042276	GO:GO:0071897	EnsemblPlants:KRH09498	ProteinID:KRH09498	ProteinID:KRH09498.1	PFAM:PF04042
PIRSF:PIRSF000799	InterPro:POLE2	PANTHER:PTHR12708	UniParc:UPI0006EDD3F1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr16:+:37608196..37613873

Molecular Weight (calculated)

63980.0 Da

IEP (calculated)

6.329

GRAVY (calculated)

-0.111

Length

561 amino acids

Sequence
(BLAST)

001: MNASMRKKVQ RKCKIRGYNL KVDALNEILS FASRFEGPDE DEAIDLLLVE LDSSLKSTII DKETVQRVVS LLLEATEATE ETSDAAAAIR VVDAFLIPKY
101: KYDYSRKQFY EHTGSLSIHG EASAKSDLYR ERFLLLFQRL SRDQHFSAPA FESEFSHFGS CEISPIQSLV GQTGRRWVMG VISQLEDGHY YLEDLTAAVK
201: INLSNARITT GLFSENTIVV AEGEMLVEGI FQVLTCGFPP LEDRDKSVTL LAGHDFFGAG TFTKEETIRL AEMEEKAVND MFIILSDIWL DNEETLKKLE
301: VVLDGFEKEI VVPSLFVFMG NFSSKPCNLS FHFYSSLRMQ FGKLGEMIAA HTRLKEHSKF LFIPGPDDAG PSNVLPRCAL PKYLTEELQK HIPNAIFSSN
401: PCRVKFYTQE IVFFRQDMLY RMRRSCLMPP STEETCDHFE HLVATITHQS HLCPLPLTVQ PIIWNYDHCL YLYPTPHTFW ETEVSRRHSS TQESLVLIQV
501: PSQLTTHLWH IVPALRKLNC QPCHKLSIIY VGLSSSNHEH LGHFGFAILS SYIRPLMKLV I

Best Arabidopsis Sequence Match ( AT5G22110.2 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT VFISISNPAR NPPYN

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.