Factsheet for Solyc03g098250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079711	Potato	mitochondrion	98.87	98.87
VIT_17s0000g04830.t01	Wine grape	mitochondrion	77.13	77.42
Os05t0160800-01	Rice	cytosol, nucleus	65.97	69.25
GSMUA_Achr3P07710_001	Banana	mitochondrion	69.0	68.87
TraesCS3D01G120300.1	Wheat	mitochondrion	68.62	68.11
TraesCS3B01G137500.1	Wheat	mitochondrion	68.62	68.11
EES15109	Sorghum	mitochondrion	68.43	67.92
TraesCS3A01G118400.1	Wheat	mitochondrion	68.43	67.92
HORVU3Hr1G021900.1	Barley	cytosol	10.02	67.09
AT5G22110.1	Thale cress	nucleus	66.54	66.92
CDY31165	Canola	cytosol	65.78	66.79
CDX83257	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	65.22	66.09
Bra000520.1-P	Field mustard	nucleus	65.22	65.97
Zm00001d031751_P001	Maize	cytosol, nucleus, plastid	46.69	65.17
HORVU3Hr1G021820.1	Barley	plastid	68.24	65.16
KRH38973	Soybean	cytosol	37.05	64.47
KRH09498	Soybean	mitochondrion	65.03	61.32
Zm00001d031750_P001	Maize	mitochondrion	22.68	55.81

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.8.60	MapMan:13.2.3.3.2	InterPro:DNA_pol_alpha/epsilon_bsu	InterPro:DNA_pol_e_bsu_N
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008622	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0042276	GO:GO:0051781
GO:GO:0070182	UniProt:K4BJP0	PFAM:PF04042	PFAM:PF12213	PIRSF:PIRSF000799	InterPro:POLE2
PANTHER:PTHR12708	EnsemblPlantsGene:Solyc03g098250.2	EnsemblPlants:Solyc03g098250.2.1	UniParc:UPI000276877B	SEG:seg	:

Description

DNA polymerase epsilon subunit B [Source:Projected from Arabidopsis thaliana (AT5G22110) UniProtKB/Swiss-Prot;Acc:Q500V9]

Coordinates

chr3:+:60602379..60607900

Molecular Weight (calculated)

59822.7 Da

IEP (calculated)

5.949

GRAVY (calculated)

-0.087

Length

529 amino acids

Sequence
(BLAST)

001: MSGVLRNKVQ RKFKMRGYSL KVEALSEVLS FLSHFPSDAF DDALELLLDE LHHLSLKSSI LDREPVHKVV SLLLEADAAV EENPSSSSSS ASALRVIDTF
101: IVPKFRYDPV KKFFHEHTGR LPIHGDASAK ATLYKDRFLL LFQRVSRDPR FSTLAFDASS SDYGSCEISP IQSLVGRVGR RWIMGVISQL EDGHFYLEDL
201: TAAVEVNLSS YKITTGFFLE NTIVLAEGEM QLDGVFQVRT CGFPPLEDRE KSMAFFSGLD FFGGGILTKE ETLRLVELEK NAVNDMFVIL SDVWLDNEET
301: LGNLETILNG YENVEVVPSL FVFMGNFCSQ PFNLSFKSIS SLRVQFGKLG QMIASHQRLK EHSRFLFIPG PDDVGPSTAL PRCTLPKYLT EEFQKYVPNA
401: IFSSNPCRIK FYTQDIVLFR HDMLYRMRRS CLIPPSMEET SDPFEHLVAT IIHQSHLCPL PLTVQPIIWN YDHGLHLYPT PHTIVLGDKS EQKAFRYTGV
501: TCFNPGSFSN DGTFVAYRPC NQEVELSAL

Best Arabidopsis Sequence Match ( AT5G22110.1 )
(BLAST)

001: MSSTSQKRKK IQKKFKNRGY NLKFDALDEI LVFADQFPDD DDGEAIDLLL DNLQETHKSS TVDAESVRGL INRLLGAHNA PEEPTTSASS LAIIDAFLVP
101: KFGYDSVKKK FNEHTSSLPI HGEASAKTAL YRERFMLLSQ RVSRAEHFSR PAFDAEMSQF ENNEISSIQS LISQRGRKWV MGVISQLEDG HFYLEDLSAS
201: VEIDLSKAKI TTGFFTENTI ILAEGEMQVN GIFQVITCGF PPLEDRDKTL KAHSEYDFFG GGTLTKEEMI KLADLERQAV NDTFVILSDI WLDDEEVMRK
301: LETVLDGFES VETVPSLFVF MGNFCSRPCN LSFGSYSSLR EQFGKLGRMI GNHPRLKENS RFLFIPGPED AGPSTVLPRC ALPKYLTEEL RNIIPNAIFS
401: SNPCRVKFYN QEIVFFRQDL LYRMRRSCLV TPSSEETNDP FKHLVYTITH QSHLCPLPLM VQPIIWNYDH ALRLYPTPHT IVLGDKSEQE VCKFGGTTCF
501: NPGSFSTDST FVAYRPSTQE VELSAL

Arabidopsis Description

DPB2DNA polymerase epsilon subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q500V9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.