Factsheet for Bra014797.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000520.1-P
Bra008860.1-P
Bra012016.1-P
Bra014795.1-P
Bra014797.1-P
Bra018641.1-P
Bra023389.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54710.1	Bra018641.1-P	AT1G08260.1	22773747
AT3G54710.1	Bra012016.1-P	AT2G27470.1	22773747
AT3G54710.1	Bra014795.1-P	AT3G54710.1	22773747
AT3G54710.1	Bra014797.1-P	AT3G54710.1	22773747
AT3G54710.1	Bra008860.1-P	AT5G13060.1	18818695
AT3G54710.1	Bra023389.1-P	AT5G13060.1	18818695
AT3G54710.1	Bra000520.1-P	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76137	Canola	cytosol, plastid	93.7	91.31
Bra014795.1-P	Field mustard	cytosol	69.78	91.19
AT3G54710.1	Thale cress	cytosol, plastid	60.0	56.79
Bra022834.1-P	Field mustard	nucleus, plastid	37.83	31.58
Bra018272.1-P	Field mustard	nucleus	39.35	30.83
VIT_07s0005g03090.t01	Wine grape	nucleus	37.17	29.64
Solyc06g008510.2.1	Tomato	nucleus, plastid	35.87	28.3
PGSC0003DMT400028257	Potato	nucleus, plastid	35.0	27.62
KRH32170	Soybean	plastid	35.22	27.18
HORVU2Hr1G003370.11	Barley	cytosol	27.39	26.92
GSMUA_Achr10P...	Banana	nucleus	31.52	26.61
TraesCS2D01G023000.1	Wheat	cytosol, plastid	30.65	26.11
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	24.78	26.09
Solyc01g006140.2.1	Tomato	nucleus	31.52	25.35
KRH19542	Soybean	nucleus	33.7	25.04
TraesCS2A01G022200.1	Wheat	plastid	30.22	24.05
EER89201	Sorghum	nucleus	30.0	24.0
TraesCS2B01G030600.1	Wheat	plastid	30.22	23.97
HORVU4Hr1G047140.6	Barley	plastid	11.3	23.85
Zm00001d045354_P002	Maize	nucleus	29.35	23.56
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	29.78	23.3
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	18.48	22.08
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	31.96	15.39

Protein Annotations

EnsemblPlants:Bra014797.1	EnsemblPlants:Bra014797.1-P	EnsemblPlantsGene:Bra014797	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C
InterPro:WH_DNA-bd_sf	PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	PFAM:PF08839	PFAM:PF16679	SEG:seg
SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI0002544D0A	UniProt:M4DE78	MapMan:13.2.1.3	:

Description

AT3G54710 (E=2e-095) ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B); cyclin-dependent protein kinase

Coordinates

chrA04:-:3219654..3221953

Molecular Weight (calculated)

51934.1 Da

IEP (calculated)

4.517

GRAVY (calculated)

-0.587

Length

460 amino acids

Sequence
(BLAST)

001: MASASSNPET LFSTKTPDKT ATLSTRPRDC DKPVRRQILT SPRKPETTVK LPERFEILDE CFNGLVTAIR LLKLKGSLTS FANICPKIEY LTNRIFSYDH
101: LAQMKHIYPE ATEVKRVLKC DEVTSCMKPT LHINLNTDAI ELEDTSCGTK YMQLRNVFYS KLVDFYKAHP KDEFPKELLP ESFNFSKKDS DTISVVDVGA
201: FKVENDGFDV QMDEMEQEED KVNKVFPDST LSDGTEECLL PNTESTPAKV LSTPSKDLST PIKLMSATPT LQPSRRCITM TPDDDSDSVR PTNDLERRPS
301: RTRCLNFDTL EEEDGTVSDE SNDEANDDEA SDASSDEDSD ASYDEISLLH SMIEEPKAET VKQNLPKLVN VIHKMFHSTN RTVITKEELL HKMIACQIEI
401: VDRKEVEEQL RLMLQLVPDW ISETKASFGD VLVSINKMST PETVRARLEE ATSQDSSTVS

Best Arabidopsis Sequence Match ( AT3G54710.1 )
(BLAST)

001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY

Arabidopsis Description

CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.