Factsheet for Bra014795.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000520.1-P
Bra008860.1-P
Bra012016.1-P
Bra014795.1-P
Bra014797.1-P
Bra018641.1-P
Bra023389.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54710.1	Bra018641.1-P	AT1G08260.1	22773747
AT3G54710.1	Bra012016.1-P	AT2G27470.1	22773747
AT3G54710.1	Bra014795.1-P	AT3G54710.1	22773747
AT3G54710.1	Bra014797.1-P	AT3G54710.1	22773747
AT3G54710.1	Bra008860.1-P	AT5G13060.1	18818695
AT3G54710.1	Bra023389.1-P	AT5G13060.1	18818695
AT3G54710.1	Bra000520.1-P	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014797.1-P	Field mustard	cytosol, plastid	91.19	69.78
CDY13226	Canola	cytosol, plastid	90.06	66.46
AT3G54710.1	Thale cress	cytosol, plastid	62.5	45.27
Bra022834.1-P	Field mustard	nucleus, plastid	39.49	25.23
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	30.68	24.71
Bra018272.1-P	Field mustard	nucleus	39.49	23.68
VIT_07s0005g03090.t01	Wine grape	nucleus	37.5	22.88
HORVU2Hr1G003370.11	Barley	cytosol	28.98	21.79
KRH32170	Soybean	plastid	36.08	21.31
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	22.73	20.78
GSMUA_Achr10P...	Banana	nucleus	31.25	20.18
Solyc06g008510.2.1	Tomato	nucleus, plastid	33.24	20.07
KRH19542	Soybean	nucleus	34.66	19.71
TraesCS2D01G023000.1	Wheat	cytosol, plastid	30.11	19.63
PGSC0003DMT400028257	Potato	nucleus, plastid	32.39	19.55
TraesCS2B01G030600.1	Wheat	plastid	30.11	18.28
EER89201	Sorghum	nucleus	29.83	18.26
Solyc01g006140.2.1	Tomato	nucleus	29.55	18.18
TraesCS2A01G022200.1	Wheat	plastid	29.83	18.17
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	29.55	17.69
Zm00001d045354_P002	Maize	nucleus	28.69	17.63
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	30.68	11.31
HORVU4Hr1G047140.6	Barley	plastid	6.53	10.55

Protein Annotations

EnsemblPlants:Bra014795.1	EnsemblPlants:Bra014795.1-P	EnsemblPlantsGene:Bra014795	Gene3D:1.10.10.1420	InterPro:Cdt1_C	InterPro:WH_DNA-bd_sf
PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	PFAM:PF16679	SEG:seg	SUPFAM:SSF46785	UniParc:UPI0002544D08
UniProt:M4DE76	MapMan:13.2.1.3	:	:	:	:

Description

AT3G54710 (E=1e-063) ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B); cyclin-dependent protein kinase

Coordinates

chrA04:-:3203840..3205263

Molecular Weight (calculated)

39768.8 Da

IEP (calculated)

4.430

GRAVY (calculated)

-0.606

Length

352 amino acids

Sequence
(BLAST)

001: MKHIYPEAIE VKRVLKCDSE TSCMKPTLHI NLNTDAIELE DTSCGTKYMQ LRKVFYSKLV EFYKAHPKDE IPKELLPEPF NFSKKDSDTI SVVDVGAFKV
101: ENDGFDVQMD EMEQEEDKVN KVFPDSTLSD GTEECLLPNT ESTPAKVLST PSKDLSTPIK LMSATPTLQP SRRCITMTPD DDNDSVRSTN NLERRTSRTR
201: CLNFDTLEEE EGTVSGESND EASDASSDED SDASYDEISL LHSMIEEPKT ESIKQNLPKL VNVIHKLFHS TKRTVITKEE LLHKMIACQI DIVDRKEVEE
301: QLRLMLQLVP DWISETKASF GDVLVSINKM STPETVRARL EEATSQDTST VS

Best Arabidopsis Sequence Match ( AT3G54710.1 )
(BLAST)

001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY

Arabidopsis Description

CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.