Factsheet for Bra023389.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008604.1-P
Bra016291.1-P
Bra018272.1-P
Bra022834.1-P
Bra024680.1-P
Bra029471.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	Bra016291.1-P	AT1G26830.1	15659098
AT5G13060.1	Bra024680.1-P	AT1G26830.1	15659098
AT5G13060.1	Bra018272.1-P	AT2G31270.1	18818695
AT5G13060.1	Bra022834.1-P	AT2G31270.1	18818695
AT5G13060.1	Bra029471.1-P	AT4G14700.1	18818695
AT5G13060.1	Bra008604.1-P	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85673	Canola	plastid	100.0	88.81
Bra008860.1-P	Field mustard	plastid	84.64	77.93
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	78.49	69.34
GSMUA_Achr10P...	Banana	cytosol	12.9	48.55
Os05t0398100-01	Rice	cytosol	16.28	47.32
Solyc09g065210.2.1	Tomato	cytosol	50.38	46.33
Solyc06g084250.2.1	Tomato	cytosol	49.77	45.96
GSMUA_Achr10P...	Banana	endoplasmic reticulum	27.34	45.64
VIT_07s0104g00020.t01	Wine grape	cytosol	48.85	45.11
GSMUA_Achr2P00100_001	Banana	cytosol	12.75	44.62
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	49.0	44.62
Bra030036.1-P	Field mustard	plastid	12.29	44.44
Bra002228.1-P	Field mustard	nucleus	49.16	44.2
HORVU1Hr1G062160.1	Barley	cytosol	47.47	42.92
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	16.28	42.74
EES19490	Sorghum	nucleus	48.39	42.28
TraesCS1A01G249400.1	Wheat	cytosol	47.47	42.21
GSMUA_Achr9P17600_001	Banana	cytosol	48.08	42.07
TraesCS1D01G248900.1	Wheat	cytosol	47.47	41.64
TraesCS1B01G260100.1	Wheat	cytosol	47.47	41.64
GSMUA_Achr10P...	Banana	cytosol	12.75	41.5
GSMUA_Achr2P00090_001	Banana	cytosol	11.83	41.18
KRG95533	Soybean	cytosol	44.39	40.53
KRH67208	Soybean	cytosol	43.32	40.0
Zm00001d038134_P001	Maize	cytosol	48.54	39.75
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	12.14	39.11
Zm00001d010341_P002	Maize	cytosol	45.16	38.33
PGSC0003DMT400051857	Potato	endoplasmic reticulum	9.68	34.43
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	22.89	34.33
Bra002227.1-P	Field mustard	cytosol	7.37	8.91

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	InterPro:BTB/POZ_dom	EnsemblPlantsGene:Bra023389	EnsemblPlants:Bra023389.1	EnsemblPlants:Bra023389.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	UniProt:M4E3N6
PFAM:PF00514	PFAM:PF00651	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164
InterPro:SKP1/BTB/POZ_sf	SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI0002543473
SEG:seg	:	:	:	:	:

Description

AT5G13060 (E=3e-201) ABAP1 | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1); protein binding

Coordinates

chrA02:+:3151965..3155825

Molecular Weight (calculated)

72285.5 Da

IEP (calculated)

7.722

GRAVY (calculated)

-0.091

Length

651 amino acids

Sequence
(BLAST)

001: MKISKSLKLH RSNPPSNLLL VRRPSSISNL PPMENNLKRQ RTTRVAGRSS KRGRETYAVS IITQITEIEE EETDLVVAIS RHVDVLNSSF SDAGDVKGAA
101: AALSSLAKTD ENVEMMVENG AIPALVRNLE SPWSLAISGN VAKSCDHKLE KDCAVSLGLI AANQPAYQQL IVDAGVIAPT VKLLKRRGVC IGCMEANAVL
201: RRAADIITNI AHDNPRIKTN IRVEGGIPPL VELLDFPDVK VQRAAAGALR TVSFRNDENK NQVHIAQRGA ITPLIKMLES SDEQVTEMAA FALGRLAQDT
301: HNQAGIGQRG GIISLLNLLD VKTGSVQHNA AFALYGLADN EENVADFIKT GGIQKLQDDN FTVQPTRDCV VRTLKRLENK IHGPVLNQLL YLMKTTEKNI
401: QMRIALALAH LCDPKDGKLI FIDNSGMEFL LEPLYISSMK QQKYSARALF ELATKATSFA PEDSAPSSPT QRAFLGEEFV NNPTLSDVTF LIDGKQFFAH
501: KICLVASSDI FRAMFDGLYK ERNAQNVEIP NISWEVFELM MRFIYTGKIN ITKYLAQDLL VAADQYLLEG LKRLCEYTIA QDICVENIPF MYDLADTFNA
601: SALRRACTLF VLEHYTKLSS ELWFPMFIKK IIPEIRSYIT DILRRPVQAS S

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.