Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG95533 | Soybean | cytosol | 86.1 | 85.13 |
| Solyc09g065210.2.1 | Tomato | cytosol | 60.85 | 60.59 |
| Solyc06g084250.2.1 | Tomato | cytosol | 60.28 | 60.28 |
| KRH77872 | Soybean | cytosol | 58.87 | 58.78 |
| VIT_07s0104g00020.t01 | Wine grape | cytosol | 58.72 | 58.72 |
| KRH27617 | Soybean | cytosol | 58.72 | 58.47 |
| KRH35552 | Soybean | cytosol | 58.44 | 58.27 |
| KRG91259 | Soybean | cytosol | 57.87 | 57.71 |
| HORVU1Hr1G062160.1 | Barley | cytosol | 57.3 | 56.11 |
| GSMUA_Achr9P17600_001 | Banana | cytosol | 58.72 | 55.65 |
| Os05t0398100-01 | Rice | cytosol | 17.59 | 55.36 |
| TraesCS1A01G249400.1 | Wheat | cytosol | 56.88 | 54.78 |
| EES19490 | Sorghum | nucleus | 57.45 | 54.36 |
| TraesCS1D01G248900.1 | Wheat | cytosol | 57.16 | 54.31 |
| TraesCS1B01G260100.1 | Wheat | cytosol | 57.02 | 54.18 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 27.8 | 50.26 |
| Zm00001d038134_P001 | Maize | cytosol | 56.6 | 50.19 |
| Zm00001d010341_P002 | Maize | cytosol | 54.18 | 49.8 |
| CDX97221 | Canola | cytosol, mitochondrion | 49.93 | 49.79 |
| CDX69674 | Canola | cytosol | 49.79 | 49.65 |
| GSMUA_Achr10P... | Banana | cytosol | 13.9 | 49.0 |
| CDX91149 | Canola | cytosol, mitochondrion | 49.36 | 47.74 |
| GSMUA_Achr2P00090_001 | Banana | cytosol | 12.62 | 47.59 |
| GSMUA_Achr10P... | Banana | cytosol | 11.63 | 47.4 |
| CDX85673 | Canola | plastid | 49.22 | 47.34 |
| Bra008860.1-P | Field mustard | plastid | 46.95 | 46.82 |
| AT5G13060.1 | Thale cress | cytosol, mitochondrion, plastid | 48.94 | 46.81 |
| PGSC0003DMT400051857 | Potato | endoplasmic reticulum | 11.77 | 45.36 |
| GSMUA_Achr2P00160_001 | Banana | cytosol, extracellular | 15.6 | 44.35 |
| Bra023389.1-P | Field mustard | plastid | 40.0 | 43.32 |
| KRH48502 | Soybean | cytosol | 9.22 | 42.48 |
| GSMUA_Achr2P00100_001 | Banana | cytosol | 11.21 | 42.47 |
| GSMUA_AchrUn_... | Banana | extracellular, plasma membrane | 11.21 | 39.11 |
| CDY51336 | Canola | mitochondrion | 12.77 | 38.46 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 21.56 | 35.02 |
| Bra030036.1-P | Field mustard | plastid | 8.37 | 32.78 |
| CDY15719 | Canola | plastid | 5.96 | 30.22 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100806452 | Gene3D:3.30.710.10 | MapMan:35.1 | EMBL:ACUP02002046 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:Armadillo | InterPro:BTB/POZ_dom | EnsemblPlantsGene:GLYMA_03G154000 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| UniProt:I1JNU6 | InterPro:IPR000210 | InterPro:IPR000225 | InterPro:IPR011989 | EnsemblPlants:KRH67208 | ProteinID:KRH67208 |
| ProteinID:KRH67208.1 | PFAM:PF00514 | PFAM:PF00651 | PFscan:PS50097 | PFscan:PS50176 | PANTHER:PTHR23315 |
| PANTHER:PTHR23315:SF164 | InterPro:SKP1/BTB/POZ_sf | SMART:SM00185 | SMART:SM00225 | SUPFAM:SSF48371 | SUPFAM:SSF54695 |
| UniParc:UPI0002336C4A | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:36897767..36903173
Molecular Weight (calculated)
78662.3 Da
IEP (calculated)
6.983
GRAVY (calculated)
-0.073
Length
705 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKRYPVARR SSKRKLEADL TEDQTHTKAS KISAKILKQV SLLNSAAIPF TALDCATVKS AVHSLSVLAA NEDLVDTILN CGVVPALVRH LRLTDNMRKY
101: DGHEAETVKD YSDGVTEHDQ FDVVKRCAVI LELLAIEQEY QQLIVDAGAL PCLVDWLRMQ KISTTSQPLI DLLKRVADAI TSLIHENNGI KTLFRMEGGI
201: APLVELLEFN DIKVQRAAAR ALRTLAFKND GNKNQIVESN ALPTLVLMLQ SEDPKTHYEA VGVIGNLVHS SPDIKKEVLL AGALQPVISL LSSCCSESQR
301: EAALLIGQFA TTDSDCKVHI CQRGAIPPLV DMLRSPDAEL QEMSAFALGR LAQDSHNQAG IGQCGGIEPL LKLLDSKKVP VQQNAIFALY SLADNEDNVA
401: AIIKADGFRK LKAGNFRNQQ TVECVAKTLK KLEEKTQGRV LKHLIHLMRF AEAVQRRVAI ALAYLCSPHD RKTIFINNNG LKLLLDTLKS SNLKQKSDAS
501: AALHKLAIKA SSSFSLFDIA SPSPTLQMYF GDEYVNNPKL SDVTFLVEGR SFYAHRDCLL SSDIFRAMFD GSYREREAKS IVIPNIKWDV FELMMRYIYT
601: GTVDVNLDIA QDLLRAADQY LLDGLKRICE YTISQEISEE NVSLLYKMSE DFNATSLKHS CILFMLEKFD KLRCEPWYCP LVRHILPDIC MFFSTLLVKS
701: HPTDS
101: DGHEAETVKD YSDGVTEHDQ FDVVKRCAVI LELLAIEQEY QQLIVDAGAL PCLVDWLRMQ KISTTSQPLI DLLKRVADAI TSLIHENNGI KTLFRMEGGI
201: APLVELLEFN DIKVQRAAAR ALRTLAFKND GNKNQIVESN ALPTLVLMLQ SEDPKTHYEA VGVIGNLVHS SPDIKKEVLL AGALQPVISL LSSCCSESQR
301: EAALLIGQFA TTDSDCKVHI CQRGAIPPLV DMLRSPDAEL QEMSAFALGR LAQDSHNQAG IGQCGGIEPL LKLLDSKKVP VQQNAIFALY SLADNEDNVA
401: AIIKADGFRK LKAGNFRNQQ TVECVAKTLK KLEEKTQGRV LKHLIHLMRF AEAVQRRVAI ALAYLCSPHD RKTIFINNNG LKLLLDTLKS SNLKQKSDAS
501: AALHKLAIKA SSSFSLFDIA SPSPTLQMYF GDEYVNNPKL SDVTFLVEGR SFYAHRDCLL SSDIFRAMFD GSYREREAKS IVIPNIKWDV FELMMRYIYT
601: GTVDVNLDIA QDLLRAADQY LLDGLKRICE YTISQEISEE NVSLLYKMSE DFNATSLKHS CILFMLEKFD KLRCEPWYCP LVRHILPDIC MFFSTLLVKS
701: HPTDS
001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV
Arabidopsis Description
ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.