Factsheet for TraesCS1B01G260100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G022200.1
TraesCS2B01G030600.1
TraesCS2D01G023000.1
TraesCS2D01G023500.1
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1
TraesCS7A01G151700.1
TraesCS7A01G213600.1
TraesCS7B01G055600.1
TraesCS7B01G120800.1
TraesCS7D01G153500.1
TraesCS7D01G215600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	TraesCS6A01G306600.1	AT1G26830.1	15659098
AT5G13060.1	TraesCS6B01G335200.1	AT1G26830.1	15659098
AT5G13060.1	TraesCS6D01G285800.1	AT1G26830.1	15659098
AT5G13060.1	TraesCS6A01G306600.1	AT1G69670.1	15659098
AT5G13060.1	TraesCS6B01G335200.1	AT1G69670.1	15659098
AT5G13060.1	TraesCS6D01G285800.1	AT1G69670.1	15659098
AT5G13060.1	TraesCS2A01G022200.1	AT2G31270.1	18818695
AT5G13060.1	TraesCS2B01G030600.1	AT2G31270.1	18818695
AT5G13060.1	TraesCS2D01G023000.1	AT2G31270.1	18818695
AT5G13060.1	TraesCS2D01G023500.1	AT2G31270.1	18818695
AT5G13060.1	TraesCS7A01G151700.1	AT4G14700.1	18818695
AT5G13060.1	TraesCS7B01G055600.1	AT4G14700.1	18818695
AT5G13060.1	TraesCS7D01G153500.1	AT4G14700.1	18818695
AT5G13060.1	TraesCS7A01G213600.1	AT5G16690.1	18818695
AT5G13060.1	TraesCS7B01G120800.1	AT5G16690.1	18818695
AT5G13060.1	TraesCS7D01G215600.1	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G248900.1	Wheat	cytosol	99.73	99.73
TraesCS1A01G249400.1	Wheat	cytosol	97.84	99.18
HORVU1Hr1G062160.1	Barley	cytosol	95.69	98.61
Os05t0398100-01	Rice	cytosol	27.09	89.73
EES19490	Sorghum	nucleus	85.44	85.1
GSMUA_Achr9P17600_001	Banana	cytosol	79.65	79.44
Zm00001d010341_P002	Maize	cytosol	81.4	78.75
Zm00001d038134_P001	Maize	cytosol	82.21	76.73
VIT_05s0020g03020.t01	Wine grape	cytosol	73.32	76.3
KRH77872	Soybean	cytosol	72.1	75.78
KRH27617	Soybean	cytosol	72.1	75.56
KRG91259	Soybean	cytosol	71.16	74.68
KRH35552	Soybean	cytosol	70.89	74.4
AT5G19330.1	Thale cress	cytosol	70.35	73.52
PGSC0003DMT400051860	Potato	cytosol	70.08	73.34
CDX92539	Canola	cytosol	69.27	73.32
Bra002228.1-P	Field mustard	nucleus	71.16	72.93
CDX88895	Canola	cytosol, nucleus, plastid	70.08	72.73
Solyc06g084250.2.1	Tomato	cytosol	69.0	72.62
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	69.95	72.59
Solyc09g065210.2.1	Tomato	cytosol	68.33	71.61
PGSC0003DMT400033530	Potato	cytosol	68.33	71.61
VIT_07s0104g00020.t01	Wine grape	cytosol	67.92	71.49
CDX70871	Canola	cytosol	20.89	58.05
KRH67208	Soybean	cytosol	54.18	57.02
KRG95533	Soybean	cytosol	54.31	56.52
CDX97221	Canola	cytosol, mitochondrion	50.0	52.48
PGSC0003DMT400051857	Potato	endoplasmic reticulum	12.94	52.46
CDX69674	Canola	cytosol	49.87	52.33
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	50.4	50.75
CDX91149	Canola	cytosol, mitochondrion	49.33	50.21
CDX85673	Canola	plastid	49.6	50.2
Bra008860.1-P	Field mustard	plastid	47.44	49.79
Bra023389.1-P	Field mustard	plastid	41.64	47.47
CDY51336	Canola	mitochondrion	13.07	41.45
CDY13990	Canola	nucleus	69.27	40.63
CDY15719	Canola	plastid	6.87	36.69
Bra030036.1-P	Field mustard	plastid	8.76	36.11
TraesCS7B01G375000.1	Wheat	cytosol	6.74	28.41
TraesCS7B01G373800.1	Wheat	cytosol	7.41	24.12
TraesCS7B01G376100.1	Wheat	cytosol	4.72	23.97
TraesCS7B01G375800.1	Wheat	cytosol	2.96	22.92
TraesCS7B01G373600.1	Wheat	cytosol	9.57	22.83
TraesCS7B01G375500.1	Wheat	extracellular, vacuole	8.76	22.11
TraesCS7B01G374000.1	Wheat	cytosol	9.97	21.7
TraesCS7B01G373700.1	Wheat	cytosol	10.51	21.37
TraesCS7B01G374200.1	Wheat	cytosol	9.97	21.33
TraesCS7B01G375700.1	Wheat	cytosol	9.7	20.75
TraesCS7B01G373900.2	Wheat	cytosol	10.24	20.11
TraesCS7B01G373200.1	Wheat	cytosol, plastid	9.43	19.94
TraesCS7B01G379600.1	Wheat	cytosol	11.73	18.16
TraesCS7B01G375900.1	Wheat	cytosol	8.63	10.68

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR000225
InterPro:IPR011989	PFAM:PF00514	PFAM:PF00651	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315
PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G260100	EnsemblPlants:TraesCS1B01G260100.1	TIGR:cd14821	SEG:seg	:

Description

No Description!

Coordinates

chr1B:-:457460421..457471672

Molecular Weight (calculated)

81016.2 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.103

Length

742 amino acids

Sequence
(BLAST)

001: MEAEQQKPQR PRRKAQKRRI DDEAAASAAA AAAAAAAAAA AAAAVSSPLG SADADDDNED DEGSVGPEIC CRQSQAAVAR EVRTQVDALH HCFSWRHADR
101: ATAKRATSVL AELAKNEEMV NVIVEGGAVP ALVCHLKVPP MAAAVEEEQQ PRPFEHEVEK GAAFALGLLA VKPEHQQLIV DAGALPLLVT LLRRHKNATN
201: SRAVNSLIRR AADAITNLAH ENSNIKTCIR IEGGIPPLVE LLESQDIKVQ RAAAGALRTL AFKNDENKTL IVDCNALPTL ILMLRSEDAA IHYEAVGVIG
301: NLVHSSPNIK KEVLNAGALQ PVIGLLSSCC TESQREAALL LGQFASADSE CKVHIVQRGA VRPLIDMLQS ADFQLREMSA FALGRLAQDT HNQAGIAYNG
401: GLLPLLKLLD SKNGSLQHNA AFALYGVADN EDYVSDFVKV GGVQKLQDGE FIVQATKDCV AKTLKRLEEK INGRVLKHLV YLMRVGEKSV QRRVALALAH
501: LCAPEDQRTI FIDNNGLDLL LDLLVSVSSK HQQDGSVALY KLANKAAALS PMDAAPPSPT PQVYLGEQYV NSSTLSDVTF LVEGKRFYAH RIALLASSDA
601: FRAMFDGGYR EKDARDIEIP NIRWDVFELM MRFIYTGSVE VTNELAQDLL RAADQYLLEG LKRLCEYTIA QDVNLDNVSD MYDLSEAFHA MSLRHTCVLF
701: ILEQFDKICT RPGFSQLIQR VIPELRNFFA KALRPSHRSA QP

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.