Factsheet for TraesCS2D01G023000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G130700.1
TraesCS1A01G249400.1
TraesCS1B01G156600.1
TraesCS1B01G260100.1
TraesCS1B01G417700.1
TraesCS1D01G139000.1
TraesCS1D01G248900.1
TraesCS2A01G022200.1
TraesCS2B01G030600.1
TraesCS2D01G023000.1
TraesCS2D01G023500.1
TraesCS3A01G118400.1
TraesCS3B01G137500.1
TraesCS3D01G120300.1
TraesCS4A01G306400.1
TraesCS4B01G008300.1
TraesCS4D01G007000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	TraesCS1A01G130700.1	AT1G08260.1	22773747
AT2G31270.1	TraesCS1B01G156600.1	AT1G08260.1	22773747
AT2G31270.1	TraesCS1B01G417700.1	AT1G08260.1	22773747
AT2G31270.1	TraesCS1D01G139000.1	AT1G08260.1	22773747
AT2G31270.1	TraesCS2A01G022200.1	AT2G31270.1	22773747
AT2G31270.1	TraesCS2B01G030600.1	AT2G31270.1	22773747
AT2G31270.1	TraesCS2D01G023000.1	AT2G31270.1	22773747
AT2G31270.1	TraesCS2D01G023500.1	AT2G31270.1	22773747
AT2G31270.1	TraesCS1A01G249400.1	AT5G13060.1	18818695
AT2G31270.1	TraesCS1B01G260100.1	AT5G13060.1	18818695
AT2G31270.1	TraesCS1D01G248900.1	AT5G13060.1	18818695
AT2G31270.1	TraesCS3A01G118400.1	AT5G22110.1	22773747
AT2G31270.1	TraesCS3B01G137500.1	AT5G22110.1	22773747
AT2G31270.1	TraesCS3D01G120300.1	AT5G22110.1	22773747
AT3G54710.1	TraesCS1A01G130700.1	AT1G08260.1	22773747
AT3G54710.1	TraesCS1B01G156600.1	AT1G08260.1	22773747
AT3G54710.1	TraesCS1B01G417700.1	AT1G08260.1	22773747
AT3G54710.1	TraesCS1D01G139000.1	AT1G08260.1	22773747
AT3G54710.1	TraesCS4A01G306400.1	AT2G27470.1	22773747
AT3G54710.1	TraesCS4B01G008300.1	AT2G27470.1	22773747
AT3G54710.1	TraesCS4D01G007000.1	AT2G27470.1	22773747
AT3G54710.1	TraesCS2A01G022200.1	AT3G54710.1	22773747
AT3G54710.1	TraesCS2B01G030600.1	AT3G54710.1	22773747
AT3G54710.1	TraesCS2D01G023000.1	AT3G54710.1	22773747
AT3G54710.1	TraesCS2D01G023500.1	AT3G54710.1	22773747
AT3G54710.1	TraesCS1A01G249400.1	AT5G13060.1	18818695
AT3G54710.1	TraesCS1B01G260100.1	AT5G13060.1	18818695
AT3G54710.1	TraesCS1D01G248900.1	AT5G13060.1	18818695
AT3G54710.1	TraesCS3A01G118400.1	AT5G22110.1	22773747
AT3G54710.1	TraesCS3B01G137500.1	AT5G22110.1	22773747
AT3G54710.1	TraesCS3D01G120300.1	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	74.07	91.53
TraesCS2B01G030600.1	Wheat	plastid	94.81	88.28
TraesCS2A01G022200.1	Wheat	plastid	92.78	86.68
HORVU2Hr1G003370.11	Barley	cytosol	72.96	84.19
EER89201	Sorghum	nucleus	61.48	57.74
Zm00001d045354_P002	Maize	nucleus	59.81	56.37
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	61.11	56.12
HORVU4Hr1G047140.6	Barley	plastid	19.07	47.25
GSMUA_Achr10P...	Banana	nucleus	43.33	42.94
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	24.07	33.77
VIT_07s0005g03090.t01	Wine grape	nucleus	35.56	33.28
PGSC0003DMT400028257	Potato	nucleus, plastid	35.37	32.76
Solyc01g006140.2.1	Tomato	nucleus	34.26	32.34
Solyc06g008510.2.1	Tomato	nucleus, plastid	34.63	32.08
AT2G31270.1	Thale cress	nucleus, plastid	33.7	31.87
CDY67450	Canola	cytosol	15.37	30.97
CDX76134	Canola	cytosol, plastid	26.67	30.84
Bra014797.1-P	Field mustard	cytosol, plastid	26.11	30.65
CDX76137	Canola	cytosol, plastid	26.48	30.3
CDX84793	Canola	nucleus, plastid	30.74	30.13
Bra022834.1-P	Field mustard	nucleus, plastid	30.74	30.13
Bra014795.1-P	Field mustard	cytosol	19.63	30.11
CDY23948	Canola	nucleus, plastid	30.56	29.84
CDY13226	Canola	cytosol, plastid	26.3	29.77
CDY24744	Canola	nucleus	32.04	29.52
CDY15409	Canola	nucleus, plastid	26.67	29.03
Bra018272.1-P	Field mustard	nucleus	30.93	28.45
CDY10780	Canola	nucleus	30.74	28.28
KRH32170	Soybean	plastid	31.11	28.19
AT3G54710.1	Thale cress	cytosol, plastid	25.0	27.78
KRH19542	Soybean	nucleus	29.81	26.01
TraesCS1D01G173500.1	Wheat	nucleus	26.85	25.99
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	42.78	24.19

Protein Annotations

EnsemblPlants:TraesCS2D01G023000.1	EnsemblPlantsGene:TraesCS2D01G023000	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	InterPro:WH_DNA-bd_sf
PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	PFAM:PF08839	PFAM:PF16679	SEG:seg	SMART:SM01075
SUPFAM:SSF46785	TIGR:cd08674	TIGR:cd08767	MapMan:13.2.1.3	:	:

Description

No Description!

Coordinates

chr2D:+:10426653..10429498

Molecular Weight (calculated)

59625.6 Da

IEP (calculated)

8.948

GRAVY (calculated)

-0.416

Length

540 amino acids

Sequence
(BLAST)

001: MKRAVPAAAA DLVTPEKTEP RPLLRRGRSG GAVALSVKEV RRAALELQRA GRGPAAGVDA GEEDALESVA RELGVGAGAG RSPVKRRPEV KLPESYEILC
101: EFFNCFESST RLLRMKGSKA TFPNICASIQ NLAERRFTYG HLAQLKYIMP EAIVINKILL RDDKTCCMKP DLQVNLLVDS VGDSVMQKGE TRYSALRRMF
201: RQRLVDFFRK HPEGDDIPEH ELPYPFTQTK SSVAQSTPRV VTEVVFAAPS PSLAEQPAVA LSHMSQSFKR RFSQRSSTCP ATASATGLPP KAESTAPSPL
301: GRKVMLSSTS GGIDHESQVQ EKSSKDVALR FGVTEGTPAK FASTPVRSMA ATPNLETPQR PISATVCDTP PLKTVKRSAR AKLFMTPTKD ASRMEEENQS
401: MSSTSPSDGD DELLGFLPKS LLQSVKEKEK RTLEEKETGY ADQVQRQKLI SCLPSTFDII FLIYQSRQRT VLTKEELIHK IIESNPKIVD KGEVEEQVRL
501: LLEFVPEWIS EKTARNGDVL CCIDTALSQF EVRQRLSGVE

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.