CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69674
CDX83257
CDX84793
CDX85673
CDX91149
CDX93579
CDX95079
CDX97221
CDY10780
CDY15409
CDY23948
CDY24744
CDY31165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	CDX93579	AT1G08260.1	22773747
AT2G31270.1	CDX95079	AT1G08260.1	22773747
AT2G31270.1	CDX84793	AT2G31270.1	22773747
AT2G31270.1	CDY10780	AT2G31270.1	22773747
AT2G31270.1	CDY15409	AT2G31270.1	22773747
AT2G31270.1	CDY23948	AT2G31270.1	22773747
AT2G31270.1	CDY24744	AT2G31270.1	22773747
AT2G31270.1	CDX69674	AT5G13060.1	18818695
AT2G31270.1	CDX85673	AT5G13060.1	18818695
AT2G31270.1	CDX91149	AT5G13060.1	18818695
AT2G31270.1	CDX97221	AT5G13060.1	18818695
AT2G31270.1	CDX83257	AT5G22110.1	22773747
AT2G31270.1	CDY31165	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018272.1-P	Field mustard	nucleus	98.98	98.98
CDY24744	Canola	nucleus	92.5	92.66
CDX84793	Canola	nucleus, plastid	69.51	74.05
CDY23948	Canola	nucleus, plastid	65.59	69.62
CDY15409	Canola	nucleus, plastid	58.6	69.35
AT2G31270.1	Thale cress	nucleus, plastid	64.4	66.2
CDY67450	Canola	cytosol	20.44	44.78
VIT_07s0005g03090.t01	Wine grape	nucleus	40.03	40.73
CDX76137	Canola	cytosol, plastid	31.35	38.98
CDX76134	Canola	cytosol, plastid	30.66	38.54
CDY13226	Canola	cytosol, plastid	30.83	37.95
KRH32170	Soybean	plastid	38.16	37.58
Solyc06g008510.2.1	Tomato	nucleus, plastid	37.31	37.56
PGSC0003DMT400028257	Potato	nucleus, plastid	36.46	36.71
GSMUA_Achr10P...	Banana	nucleus	33.22	35.78
KRH19542	Soybean	nucleus	37.31	35.38
Solyc01g006140.2.1	Tomato	nucleus	34.41	35.31
EER89201	Sorghum	nucleus	31.69	32.35
Zm00001d045354_P002	Maize	nucleus	31.52	32.29
HORVU2Hr1G003370.11	Barley	cytosol	24.7	30.98
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	23.0	30.89
TraesCS2D01G023000.1	Wheat	cytosol, plastid	28.28	30.74
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	29.3	29.25
TraesCS2A01G022200.1	Wheat	plastid	28.62	29.07
TraesCS2B01G030600.1	Wheat	plastid	28.28	28.62
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	18.06	27.53
HORVU4Hr1G047140.6	Barley	plastid	9.88	26.61
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	31.18	19.16

Protein Annotations

EnsemblPlants:CDY10780	EnsemblPlantsGene:GSBRNA2T00048611001	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	InterPro:WH_DNA-bd_sf
PANTHER:PTHR28637	PANTHER:PTHR28637:SF6	PFAM:PF08839	PFAM:PF16679	ProteinID:CDY10780	ProteinID:CDY10780.1
SEG:seg	SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI0004EE07C6	UniProt:A0A078F8I5	MapMan:13.2.1.3

Description

BnaA05g11560DBnaA05g11560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8I5]

Coordinates

chrLK032006:-:662103..664984

Molecular Weight (calculated)

64386.4 Da

IEP (calculated)

8.938

GRAVY (calculated)

-0.574

Length

587 amino acids

Sequence
(BLAST)

001: MSASGSSGSI PFKSKKRLLD SPSSKSQTGN PNQPAVPFPT PEKPPEAMHT RSRNRSVALS VKEIRQAAGS RRRSEDTVGK ASSARSQLLF SSNDDSSSSA
101: SKRKNTDKEK LPEKYEILGK FFDALDSTIV LSRLRGSKPI FSNISGKIEH LTERRFCYSH LAQIKHILPE AVEVKRVLIH DEATSCMKPD LHVTLNAGAV
201: EENGNSKSES KKKISLRKVF RARLADFVKS HPQGDEVPEE QLPELFNRKK PNEDSKAEVK SVGNLMEEMA SIPAAKLISS FIKVPSTPVN AKPQINIAPT
301: ATPALSKINL APTPVKAEST PARIPSTPAK IDSTPVKALS VPASVLSTPA KIDSAPLIVA STPPECASTP ARVYSTSLAA RLQKRSSGDT SPDDVSADPP
401: AKLARRSSLS SSRSLNFDSF TEEEEADMDA TNADEDNDQV PEEDESSDDE ILSILPDKLR QSIKEQERKA IEDANPAISE AKRRRKMIAC LPKLFNVIHY
501: LIQSIRRWVI TKEELVHKII AGHSDITDRK EVEEQLILMQ ELVPEWISEK RSSSGDLLVC INKLASPQTI RSHLEEENKK AVAPPCP

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.