Factsheet for HORVU2Hr1G003370.11

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G036500.57
HORVU1Hr1G062160.1
HORVU2Hr1G003370.11
HORVU3Hr1G021820.1
HORVU3Hr1G021900.1
HORVU4Hr1G001140.1
HORVU4Hr1G047140.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	HORVU1Hr1G036500.57	AT1G08260.1	22773747
AT2G31270.1	HORVU2Hr1G003370.11	AT2G31270.1	22773747
AT2G31270.1	HORVU4Hr1G047140.6	AT2G31270.1	22773747
AT2G31270.1	HORVU1Hr1G062160.1	AT5G13060.1	18818695
AT2G31270.1	HORVU3Hr1G021820.1	AT5G22110.1	22773747
AT2G31270.1	HORVU3Hr1G021900.1	AT5G22110.1	22773747
AT3G54710.1	HORVU1Hr1G036500.57	AT1G08260.1	22773747
AT3G54710.1	HORVU4Hr1G001140.1	AT2G27470.1	22773747
AT3G54710.1	HORVU2Hr1G003370.11	AT3G54710.1	22773747
AT3G54710.1	HORVU4Hr1G047140.6	AT3G54710.1	22773747
AT3G54710.1	HORVU1Hr1G062160.1	AT5G13060.1	18818695
AT3G54710.1	HORVU3Hr1G021820.1	AT5G22110.1	22773747
AT3G54710.1	HORVU3Hr1G021900.1	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	75.64	81.01
TraesCS2D01G023000.1	Wheat	cytosol, plastid	84.19	72.96
TraesCS2B01G030600.1	Wheat	plastid	84.62	68.28
TraesCS2A01G022200.1	Wheat	plastid	83.97	67.99
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	65.81	52.38
EER89201	Sorghum	nucleus	63.68	51.83
Zm00001d045354_P002	Maize	nucleus	62.18	50.79
HORVU4Hr1G047140.6	Barley	plastid	21.79	46.79
GSMUA_Achr10P...	Banana	nucleus	45.51	39.08
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	28.85	35.06
VIT_07s0005g03090.t01	Wine grape	nucleus	38.03	30.85
PGSC0003DMT400028257	Potato	nucleus, plastid	37.61	30.19
CDY67450	Canola	cytosol	17.09	29.85
Solyc06g008510.2.1	Tomato	nucleus, plastid	37.18	29.85
Solyc01g006140.2.1	Tomato	nucleus	35.9	29.37
Bra014795.1-P	Field mustard	cytosol	21.79	28.98
CDX76134	Canola	cytosol, plastid	28.42	28.48
AT2G31270.1	Thale cress	nucleus, plastid	33.76	27.67
Bra014797.1-P	Field mustard	cytosol, plastid	26.92	27.39
CDY15409	Canola	nucleus, plastid	28.85	27.22
CDX76137	Canola	cytosol, plastid	27.35	27.12
Bra022834.1-P	Field mustard	nucleus, plastid	31.62	26.86
CDX84793	Canola	nucleus, plastid	31.62	26.86
CDY13226	Canola	cytosol, plastid	27.35	26.83
CDY23948	Canola	nucleus, plastid	31.62	26.76
CDY24744	Canola	nucleus	32.27	25.77
KRH32170	Soybean	plastid	32.69	25.67
AT3G54710.1	Thale cress	cytosol, plastid	26.07	25.1
Bra018272.1-P	Field mustard	nucleus	31.2	24.87
CDY10780	Canola	nucleus	30.98	24.7
KRH19542	Soybean	nucleus	32.27	24.39
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	44.66	21.88
HORVU1Hr1G044120.10	Barley	plastid	26.28	19.62

Protein Annotations

EnsemblPlants:HORVU2Hr1G003370.11	EnsemblPlantsGene:HORVU2Hr1G003370	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	InterPro:WH_DNA-bd_sf
PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	PFAM:PF08839	PFAM:PF16679	SEG:seg	SMART:SM01075
SUPFAM:SSF46785	UniParc:UPI000B47D839	UniProt:A0A287GX44	MapMan:13.2.1.3	:	:

Description

No Description!

Coordinates

chrchr2H:-:7351755..7353915

Molecular Weight (calculated)

52061.4 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.370

Length

468 amino acids

Sequence
(BLAST)

001: TTADITIIPR MQTSSLISDG SSPISCYEIL CEFFNCFESS TRLLRMKGSK ATFPNICASI QNLAERRFTY GHLAQLKYIM PEAIVINKIL LRDDKTCCMK
101: PDLQVNLLVD SVEDSAMQKG ETRYSALRRM FRQRLVDFFR KHPEGDDIPE HELPYPFTQT KSSVAQSTPR VVTEVVFAAP SPSLAEQPAV ALSHMSQSFK
201: RRFSQRSSTC PATASTTGLP PKAESTAPSP LSRKSMLGST SGAIGHESQV QEKSSKDVAL KFGVTEGTPA KFASTPVRSM AATPNLETPK RPISATVCDT
301: PPLQTVKRSA RAKLFMTPMK DSSSIEEENQ STSTSDGDDE LISFLPKSLL QSVKKKEKRA LEEKETGFAD QVQRQKLISC LPSTFDIIFL IYQSRQRTVL
401: TKQELIHKII ESNPKVVDKG EVEEQVRLLL EFVPEWISEK AARNGDVLCC VNTALSQSEV RQRLYGVE

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.