CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69674
CDX71450
CDX76134
CDX76137
CDX83257
CDX85673
CDX91149
CDX93579
CDX95079
CDX97221
CDY04497
CDY13226
CDY31165
CDY31178
CDY67450

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54710.1	CDX93579	AT1G08260.1	22773747
AT3G54710.1	CDX95079	AT1G08260.1	22773747
AT3G54710.1	CDX71450	AT2G27470.1	22773747
AT3G54710.1	CDY04497	AT2G27470.1	22773747
AT3G54710.1	CDY31178	AT2G27470.1	22773747
AT3G54710.1	CDX76134	AT3G54710.1	22773747
AT3G54710.1	CDX76137	AT3G54710.1	22773747
AT3G54710.1	CDY13226	AT3G54710.1	22773747
AT3G54710.1	CDY67450	AT3G54710.1	22773747
AT3G54710.1	CDX69674	AT5G13060.1	18818695
AT3G54710.1	CDX85673	AT5G13060.1	18818695
AT3G54710.1	CDX91149	AT5G13060.1	18818695
AT3G54710.1	CDX97221	AT5G13060.1	18818695
AT3G54710.1	CDX83257	AT5G22110.1	22773747
AT3G54710.1	CDY31165	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76137	Canola	cytosol, plastid	89.93	51.06
CDY13226	Canola	cytosol, plastid	89.18	50.1
CDX76134	Canola	cytosol, plastid	80.6	46.25
AT3G54710.1	Thale cress	cytosol, plastid	61.94	34.16
CDX84793	Canola	nucleus, plastid	43.66	21.23
CDY23948	Canola	nucleus, plastid	42.91	20.8
CDY24744	Canola	nucleus	45.15	20.65
VIT_07s0005g03090.t01	Wine grape	nucleus	44.03	20.45
CDY10780	Canola	nucleus	44.78	20.44
CDY15409	Canola	nucleus, plastid	36.57	19.76
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	31.72	19.45
KRH32170	Soybean	plastid	40.67	18.29
Solyc06g008510.2.1	Tomato	nucleus, plastid	37.31	17.15
HORVU2Hr1G003370.11	Barley	cytosol	29.85	17.09
PGSC0003DMT400028257	Potato	nucleus, plastid	36.57	16.81
KRH19542	Soybean	nucleus	38.43	16.64
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	23.88	16.62
Solyc01g006140.2.1	Tomato	nucleus	35.07	16.43
GSMUA_Achr10P...	Banana	nucleus	32.84	16.15
TraesCS2D01G023000.1	Wheat	cytosol, plastid	30.97	15.37
EER89201	Sorghum	nucleus	31.34	14.61
TraesCS2A01G022200.1	Wheat	plastid	30.97	14.36
Zm00001d045354_P002	Maize	nucleus	30.6	14.31
TraesCS2B01G030600.1	Wheat	plastid	30.6	14.14
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	30.97	14.12
HORVU4Hr1G047140.6	Barley	plastid	8.58	10.55
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	34.7	9.74

Protein Annotations

EnsemblPlants:CDY67450	EnsemblPlantsGene:GSBRNA2T00063594001	Gene3D:1.10.10.1420	InterPro:Cdt1_C	InterPro:WH_DNA-bd_sf	PANTHER:PTHR28637
PANTHER:PTHR28637:SF5	PFAM:PF16679	ProteinID:CDY67450	ProteinID:CDY67450.1	SEG:seg	SUPFAM:SSF46785
UniParc:UPI0004EF0A12	UniProt:A0A078JLZ5	MapMan:13.2.1.3	:	:	:

Description

BnaUnng02190DBnaUnng02190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLZ5]

Coordinates

chrLK036116:+:8132..9593

Molecular Weight (calculated)

30629.3 Da

IEP (calculated)

4.627

GRAVY (calculated)

-0.625

Length

268 amino acids

Sequence
(BLAST)

001: MKHIYPEAIE VKRVLKCDEV TSCMKPTLHI NLNTDAIELE DTSCATKYMQ LRKVFYSKLV EFYKAHPKDE IPKELLPEPV NPSQSFPSRR CITMTLDDDS
101: DSVRPTNDLE RRPSRTRCLN FDTLEEEDGT VSDKSNDEAN DDEASDASYD EISLLDSMIE EPKAETVKQN LPKLVDVIHK LFRSTNKTVI TKEELLHKMI
201: ACQIDIMNRK EVEEQLRLML QLVPDWISGT KASFGDVLVS INKMSTPETV RARLEEATSQ DTSTTPDK

Best Arabidopsis Sequence Match ( AT3G54710.1 )
(BLAST)

001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY

Arabidopsis Description

CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.