CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69674
CDX71450
CDX76134
CDX76137
CDX83257
CDX85673
CDX91149
CDX93579
CDX95079
CDX97221
CDY04497
CDY13226
CDY31165
CDY31178
CDY67450

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54710.1	CDX93579	AT1G08260.1	22773747
AT3G54710.1	CDX95079	AT1G08260.1	22773747
AT3G54710.1	CDX71450	AT2G27470.1	22773747
AT3G54710.1	CDY04497	AT2G27470.1	22773747
AT3G54710.1	CDY31178	AT2G27470.1	22773747
AT3G54710.1	CDX76134	AT3G54710.1	22773747
AT3G54710.1	CDX76137	AT3G54710.1	22773747
AT3G54710.1	CDY13226	AT3G54710.1	22773747
AT3G54710.1	CDY67450	AT3G54710.1	22773747
AT3G54710.1	CDX69674	AT5G13060.1	18818695
AT3G54710.1	CDX85673	AT5G13060.1	18818695
AT3G54710.1	CDX91149	AT5G13060.1	18818695
AT3G54710.1	CDX97221	AT5G13060.1	18818695
AT3G54710.1	CDX83257	AT5G22110.1	22773747
AT3G54710.1	CDY31165	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76137	Canola	cytosol, plastid	89.52	90.47
Bra014795.1-P	Field mustard	cytosol	66.46	90.06
CDY67450	Canola	cytosol	50.1	89.18
CDX76134	Canola	cytosol, plastid	85.74	87.58
AT3G54710.1	Thale cress	cytosol, plastid	58.28	57.2
CDX84793	Canola	nucleus, plastid	36.27	31.4
CDY24744	Canola	nucleus	38.16	31.06
CDY10780	Canola	nucleus	37.95	30.83
CDY23948	Canola	nucleus, plastid	35.64	30.74
CDY15409	Canola	nucleus, plastid	30.82	29.64
VIT_07s0005g03090.t01	Wine grape	nucleus	35.85	29.64
Solyc06g008510.2.1	Tomato	nucleus, plastid	35.01	28.64
PGSC0003DMT400028257	Potato	nucleus, plastid	34.38	28.13
KRH32170	Soybean	plastid	35.01	28.02
HORVU2Hr1G003370.11	Barley	cytosol	26.83	27.35
GSMUA_Achr10P...	Banana	nucleus	30.61	26.79
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	24.11	26.32
TraesCS2D01G023000.1	Wheat	cytosol, plastid	29.77	26.3
KRH19542	Soybean	nucleus	33.96	26.17
Solyc01g006140.2.1	Tomato	nucleus	30.19	25.17
TraesCS2A01G022200.1	Wheat	plastid	29.56	24.39
TraesCS2B01G030600.1	Wheat	plastid	29.35	24.14
Zm00001d045354_P002	Maize	nucleus	28.93	24.08
HORVU4Hr1G047140.6	Barley	plastid	10.9	23.85
EER89201	Sorghum	nucleus	28.72	23.83
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	28.72	23.3
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	18.24	22.6
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	30.4	15.18

Protein Annotations

EnsemblPlants:CDY13226	EnsemblPlantsGene:GSBRNA2T00071130001	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	InterPro:WH_DNA-bd_sf
PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	PFAM:PF08839	PFAM:PF16679	ProteinID:CDY13226	ProteinID:CDY13226.1
SEG:seg	SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI0004EF02D4	UniProt:A0A078FJ68	MapMan:13.2.1.3

Description

BnaC04g26090DBnaC04g26090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ68]

Coordinates

chrLK032032:+:679935..682447

Molecular Weight (calculated)

53726.3 Da

IEP (calculated)

4.541

GRAVY (calculated)

-0.611

Length

477 amino acids

Sequence
(BLAST)

001: MSSIENASKK PSMAPESSNP GTLFSTKTPD KTAILSTRPR DSDKAVRRQI LISPRKPETT VKLPERFEIL DECFNGLVTA IRLLKLKGSL TSFANICPKI
101: EYLTNRILSY DHLAQMKHIY SEAIEVKRVL KCDSETSCMK PTLHINLNTD AIELEDTSCG TKYMQLRKVF YSKLVDFYKS HPKDEIPKDL LPEPFNFSKR
201: ISDSDTISVV DVGAFKLEND GFDVQMEEME QEEDKVNKVT PDSALSDGTE ECLLPNTEST PAKVLSTPSK DLSTPIKLMS ATPTLQPSRR CITMTPDDDN
301: ESVRSTNDLE RRSSRTRCLN FDTLEEEEDG TVSDESNDEA NDDEASDASS DEDSDASYDE ISLLHSMIEE PRAETVKQNL PKLVDVIHKL FRSTNKTVIT
401: KEELLHKMIA CQIDIMDRKE VEEQLRLMLQ LVPDWISETK ASFGDVLVSI NKMSTPDTVR ARLEEATSQD TSTTPDK

Best Arabidopsis Sequence Match ( AT3G54710.1 )
(BLAST)

001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY

Arabidopsis Description

CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.