Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G023000.1 | Wheat | cytosol, plastid | 86.68 | 92.78 |
| TraesCS2D01G023500.1 | Wheat | endoplasmic reticulum | 67.47 | 89.24 |
| TraesCS2B01G030600.1 | Wheat | plastid | 89.27 | 88.97 |
| HORVU2Hr1G003370.11 | Barley | cytosol | 67.99 | 83.97 |
| EER89201 | Sorghum | nucleus | 60.03 | 60.35 |
| Zm00001d045354_P002 | Maize | nucleus | 57.96 | 58.46 |
| Os04t0185100-01 | Rice | cytosol, mitochondrion, plastid | 57.61 | 56.63 |
| HORVU4Hr1G047140.6 | Barley | plastid | 18.69 | 49.54 |
| GSMUA_Achr10P... | Banana | nucleus | 40.66 | 43.12 |
| GSMUA_Achr8P03390_001 | Banana | cytosol, nucleus, plastid | 22.49 | 33.77 |
| PGSC0003DMT400028257 | Potato | nucleus, plastid | 33.91 | 33.62 |
| VIT_07s0005g03090.t01 | Wine grape | nucleus | 33.39 | 33.45 |
| Solyc01g006140.2.1 | Tomato | nucleus | 32.53 | 32.87 |
| Solyc06g008510.2.1 | Tomato | nucleus, plastid | 33.05 | 32.76 |
| AT2G31270.1 | Thale cress | nucleus, plastid | 31.83 | 32.22 |
| CDY67450 | Canola | cytosol | 14.36 | 30.97 |
| CDX76134 | Canola | cytosol, plastid | 24.74 | 30.62 |
| CDX84793 | Canola | nucleus, plastid | 29.07 | 30.49 |
| Bra022834.1-P | Field mustard | nucleus, plastid | 29.07 | 30.49 |
| CDY23948 | Canola | nucleus, plastid | 29.07 | 30.38 |
| Bra014797.1-P | Field mustard | cytosol, plastid | 24.05 | 30.22 |
| CDX76137 | Canola | cytosol, plastid | 24.57 | 30.08 |
| CDY24744 | Canola | nucleus | 30.28 | 29.86 |
| CDY15409 | Canola | nucleus, plastid | 25.61 | 29.84 |
| Bra014795.1-P | Field mustard | cytosol | 18.17 | 29.83 |
| CDY13226 | Canola | cytosol, plastid | 24.39 | 29.56 |
| Bra018272.1-P | Field mustard | nucleus | 29.24 | 28.79 |
| CDY10780 | Canola | nucleus | 29.07 | 28.62 |
| KRH32170 | Soybean | plastid | 28.89 | 28.02 |
| AT3G54710.1 | Thale cress | cytosol, plastid | 23.01 | 27.37 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 25.61 | 26.1 |
| KRH19542 | Soybean | nucleus | 27.85 | 26.01 |
| GSMUA_Achr9P25190_001 | Banana | endoplasmic reticulum, vacuole | 40.83 | 24.71 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G022200.1 | EnsemblPlantsGene:TraesCS2A01G022200 | Gene3D:1.10.10.1420 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C | InterPro:WH_DNA-bd_sf |
| PANTHER:PTHR28637 | PANTHER:PTHR28637:SF5 | PFAM:PF08839 | PFAM:PF16679 | SEG:seg | SMART:SM01075 |
| SUPFAM:SSF46785 | TIGR:cd08674 | TIGR:cd08767 | MapMan:13.2.1.3 | : | : |
Description
No Description!
Coordinates
chr2A:+:10728967..10731950
Molecular Weight (calculated)
63441.9 Da
IEP (calculated)
9.468
GRAVY (calculated)
-0.482
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAATPSKKP RTAASSAGSP WKVTKSAAAV PSSAGQFATP EKMKRAAPAA AADLVTPEKT EPRPLLRRGR SGGAVALSVK EVRRAALELQ RPGKGVDAGE
101: EDALESVARE LGVGAGAGRS PVKRRPEVKL PESYEILCEF FNCFESSTRL LRMKGSKATF PNICASIQNL AERRFTYGHL AQLKYIMPEA IVINKILLRD
201: DKTCCMKPDL QVNLLVDSVE DSVMQKGETS YSALRRMFRQ RLVDFFRKHP EGDDIPEHEL PHPFTQTKSS VAQSTPRVVT EVVFAAPSPS LAEQPAVTLS
301: HMSQSFKRRF SQRSSTGPAT ASTTGLPPKA ESTAPSPLGR KLMLNSTSGG IDHESQVQEK SSKDVALRFG VTEGTPGKFA STPVRSMAGT PNLETPQRPI
401: SATVCDTPPL KTVKRSARAK LFMTPTKDAS RMEEENQSMS STSPSDGDDE LLGFLPKSLL QSVKEKEKRT LEEKETGYAD QVQRQKLISC LPSTFDIIFL
501: IYQSRQRTVL TKQELIHKII ESNPKIVDKG EVEEQVRLLL EFVPEWISEK TARNGDVLCC VNTELSQSEV RQRLSGVE
101: EDALESVARE LGVGAGAGRS PVKRRPEVKL PESYEILCEF FNCFESSTRL LRMKGSKATF PNICASIQNL AERRFTYGHL AQLKYIMPEA IVINKILLRD
201: DKTCCMKPDL QVNLLVDSVE DSVMQKGETS YSALRRMFRQ RLVDFFRKHP EGDDIPEHEL PHPFTQTKSS VAQSTPRVVT EVVFAAPSPS LAEQPAVTLS
301: HMSQSFKRRF SQRSSTGPAT ASTTGLPPKA ESTAPSPLGR KLMLNSTSGG IDHESQVQEK SSKDVALRFG VTEGTPGKFA STPVRSMAGT PNLETPQRPI
401: SATVCDTPPL KTVKRSARAK LFMTPTKDAS RMEEENQSMS STSPSDGDDE LLGFLPKSLL QSVKEKEKRT LEEKETGYAD QVQRQKLISC LPSTFDIIFL
501: IYQSRQRTVL TKQELIHKII ESNPKIVDKG EVEEQVRLLL EFVPEWISEK TARNGDVLCC VNTELSQSEV RQRLSGVE
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.