Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G183800.1 | Wheat | nucleus | 87.65 | 89.07 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 87.3 | 88.71 |
| HORVU1Hr1G044120.10 | Barley | plastid | 80.42 | 72.73 |
| EER91446 | Sorghum | nucleus | 58.2 | 58.82 |
| Os10t0489900-01 | Rice | nucleus | 59.08 | 58.46 |
| EES11553 | Sorghum | nucleus | 56.61 | 57.12 |
| Zm00001d026469_P002 | Maize | nucleus | 56.44 | 56.94 |
| Zm00001d002056_P006 | Maize | extracellular | 55.56 | 54.22 |
| Zm00001d032621_P001 | Maize | nucleus | 53.79 | 52.95 |
| Zm00001d046390_P001 | Maize | cytosol | 22.4 | 52.7 |
| Zm00001d026393_P001 | Maize | cytosol | 23.63 | 50.95 |
| KRH30328 | Soybean | mitochondrion | 8.99 | 43.59 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 33.16 | 32.98 |
| KRH52336 | Soybean | cytosol | 11.64 | 27.73 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 17.46 | 27.12 |
| PGSC0003DMT400039343 | Potato | nucleus | 23.99 | 26.41 |
| TraesCS2A01G022200.1 | Wheat | plastid | 26.1 | 25.61 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 6.35 | 25.53 |
| Solyc03g019960.2.1 | Tomato | nucleus | 21.16 | 25.48 |
| KRH38848 | Soybean | nucleus | 23.46 | 24.68 |
| KRH09362 | Soybean | mitochondrion | 20.81 | 24.18 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G167400.1 | EnsemblPlantsGene:TraesCS1A01G167400 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C | InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 |
| PFAM:PF08839 | PFAM:PF16679 | SEG:seg | SMART:SM01075 | SUPFAM:SSF46785 | TIGR:cd08674 |
| MapMan:13.2.1.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:300107108..300111709
Molecular Weight (calculated)
63170.4 Da
IEP (calculated)
4.910
GRAVY (calculated)
-0.603
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEGKSVQVD VEKGLNQMPN DSNSTSPATM QKMKPDMDDS GRRTESPTPE KPESGREEIV VSSLATNLLS ERYKDRLAEK LLGNEDETDD EDDNEFALPD
101: GSQSPVSNEL LEKHKNLLTL FNRMESSIRL LRLRKKMTTF TNIATQVEVL TKRKFLYSHL AQMKHLFPEA IQINRILLHD QKSLCMYADM EITLLKDAVE
201: CSNPQESPAI AICEAFRSKL LCFLGSHHKD IDVPEATLPE PFNLREGLYL DALHNGHSAE GVLEFSLENG FSNASHFPQS FQKLMSQKSI TKVTEKTRLL
301: SDPVEVTSLG ADDTGGPDRS SNKHVSVPVS TNISDTPSRR LISFCENSTP KQGISNSPSM AETPAMQTPK RPLPTLVAKH ETSSRPGSEP RSTNSARRSL
401: IMFSPSKFDE SPSDHGPDTS KLDKDGVTSK LDKDGVTSIT EPEVTTGKCL FPEEAFTFTV ENDNKTNQVS SMNSQEKLDS LRVTFDIVCG ISGSTKNSLI
501: TKQELFHNIL ANNLEIEETG EIEEQLHILE DLSPDWISKE LRGGEILYSI KQIPDQKSVR ERLTEVI
101: GSQSPVSNEL LEKHKNLLTL FNRMESSIRL LRLRKKMTTF TNIATQVEVL TKRKFLYSHL AQMKHLFPEA IQINRILLHD QKSLCMYADM EITLLKDAVE
201: CSNPQESPAI AICEAFRSKL LCFLGSHHKD IDVPEATLPE PFNLREGLYL DALHNGHSAE GVLEFSLENG FSNASHFPQS FQKLMSQKSI TKVTEKTRLL
301: SDPVEVTSLG ADDTGGPDRS SNKHVSVPVS TNISDTPSRR LISFCENSTP KQGISNSPSM AETPAMQTPK RPLPTLVAKH ETSSRPGSEP RSTNSARRSL
401: IMFSPSKFDE SPSDHGPDTS KLDKDGVTSK LDKDGVTSIT EPEVTTGKCL FPEEAFTFTV ENDNKTNQVS SMNSQEKLDS LRVTFDIVCG ISGSTKNSLI
501: TKQELFHNIL ANNLEIEETG EIEEQLHILE DLSPDWISKE LRGGEILYSI KQIPDQKSVR ERLTEVI
001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
Arabidopsis Description
CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.