CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30328	Soybean	mitochondrion	35.71	72.65
KRH38848	Soybean	nucleus	57.98	25.6
Zm00001d046390_P001	Maize	cytosol	22.27	21.99
KRH09362	Soybean	mitochondrion	44.12	21.52
Zm00001d026393_P001	Maize	cytosol	23.53	21.29
Solyc03g019960.2.1	Tomato	nucleus	31.51	15.92
VIT_16s0039g00430.t01	Wine grape	mitochondrion	23.95	15.62
PGSC0003DMT400039343	Potato	nucleus	30.25	13.98
GSMUA_Achr2P10650_001	Banana	nucleus	31.09	12.98
EES11553	Sorghum	nucleus	29.83	12.63
Zm00001d026469_P002	Maize	nucleus	29.41	12.46
EER91446	Sorghum	nucleus	28.99	12.3
Zm00001d002056_P006	Maize	extracellular	29.41	12.05
Zm00001d032621_P001	Maize	nucleus	28.99	11.98
TraesCS1B01G183800.1	Wheat	nucleus	27.73	11.83
TraesCS1D01G173500.1	Wheat	nucleus	27.31	11.65
TraesCS1A01G167400.1	Wheat	nucleus	27.73	11.64
Os10t0489900-01	Rice	nucleus	26.47	10.99
HORVU1Hr1G044120.10	Barley	plastid	26.89	10.21
KRH32170	Soybean	plastid	22.69	9.06
VIT_16s0039g00480.t01	Wine grape	cytosol	5.04	8.51
KRH19542	Soybean	nucleus	21.85	8.4

Protein Annotations

MapMan:13.2.1.3	UniProt:A0A0R0JCV5	EMBL:ACUP02003419	InterPro:CDT1_Gemini-bd-like	EnsemblPlantsGene:GLYMA_06G062400	GO:GO:0000076
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0051276	EnsemblPlants:KRH52336	ProteinID:KRH52336	ProteinID:KRH52336.1
PFAM:PF08839	PANTHER:PTHR28637	SUPFAM:SSF46785	UniParc:UPI0006ED69DA	InterPro:WH_DNA-bd_sf	:

Description

hypothetical protein

Coordinates

chr6:+:4714923..4716329

Molecular Weight (calculated)

26997.5 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.443

Length

238 amino acids

Sequence
(BLAST)

001: MEQNACKELS KIASNFKCEK VLETVDESIV CPTPQKNEEP LTVKSKEGQT NLPENFCSNF QNVCRQVEVL SKRKFSHAHL AQMKYILPKS VYIDRVLVHD
101: KKSLCVVPDM KITLKFEVVK DCFGESADLA LRRYFKSKLI DFFDMHPEDM PTQKSTSSYK PAKRVLDFSL MEDNDGLGIE MDKLESIRAL HESSRGCSED
201: CNSFGSVSAP QEEGTHACIL EKSGINEMFM TTGKIMMK

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.