CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30328	Soybean	mitochondrion	17.63	81.2
KRH09362	Soybean	mitochondrion	70.69	78.07
KRH52336	Soybean	cytosol	25.6	57.98
VIT_16s0039g00480.t01	Wine grape	cytosol	9.46	36.17
PGSC0003DMT400039343	Potato	nucleus	30.24	31.65
Zm00001d046390_P001	Maize	cytosol	13.73	30.71
VIT_16s0039g00430.t01	Wine grape	mitochondrion	20.22	29.86
Zm00001d026393_P001	Maize	cytosol	13.73	28.14
Solyc03g019960.2.1	Tomato	nucleus	24.12	27.6
EER91446	Sorghum	nucleus	26.9	25.85
GSMUA_Achr2P10650_001	Banana	nucleus	27.09	25.61
Zm00001d026469_P002	Maize	nucleus	25.97	24.91
EES11553	Sorghum	nucleus	25.97	24.91
TraesCS1B01G183800.1	Wheat	nucleus	25.79	24.91
TraesCS1D01G173500.1	Wheat	nucleus	25.6	24.73
Os10t0489900-01	Rice	nucleus	25.79	24.26
Zm00001d032621_P001	Maize	nucleus	25.42	23.78
Zm00001d002056_P006	Maize	extracellular	25.42	23.58
TraesCS1A01G167400.1	Wheat	nucleus	24.68	23.46
HORVU1Hr1G044120.10	Barley	plastid	24.49	21.05
KRH32170	Soybean	plastid	20.96	18.96
KRH19542	Soybean	nucleus	20.59	17.93

Protein Annotations

Gene3D:1.10.10.1420	EntrezGene:100794715	MapMan:13.2.1.3	EMBL:ACUP02005882	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C
EnsemblPlantsGene:GLYMA_09G162100	GO:GO:0000076	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0051276	UniProt:I1L3S9
EnsemblPlants:KRH38848	ProteinID:KRH38848	ProteinID:KRH38848.1	PFAM:PF08839	PFAM:PF16679	PANTHER:PTHR28637
SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI0002338B78	InterPro:WH_DNA-bd_sf	:	:

Description

hypothetical protein

Coordinates

chr9:+:38624639..38630167

Molecular Weight (calculated)

60665.3 Da

IEP (calculated)

5.533

GRAVY (calculated)

-0.417

Length

539 amino acids

Sequence
(BLAST)

001: MEQNACEELS KIASDFKCEK KVLETVDESI VCPTPQKNEE PLIVKFREGQ TNLPEKYSAL VDLFGHTSCS LRLLRLCKKS PTFQNVCRQV EVLSKREFSH
101: AHLAQMKYIL PKSVCIDKVL VHDKKSLCMV PDMKITLRFE VVKDCSGESD DLALRRYFKS KLIDFFDMHP EVADIPEAPL PEPFGKKTCR LNFEEFTGQS
201: PHVNSSTELL SISNQTEMLP EQLQLYPSFR RHFSRKNNTD QAEKAQCFLP TKTSPSSHAS DCLDNEESEK TLQKECVPLF DGVANPITER GHQKESFSMS
301: LQPSFINTPV QMIRPPYSVT CSNSESPDMK NISCVADSFI AETPAQSAPA RLLPISDVKL QDMPTQKSTS SHKPAKRVLD FSLMGDNDGL GIGVDKLESS
401: RALHEFDSFP ESSRGCYEDC NSFGSVSAPQ EAEESLKQAD LDTQHKKSSP LLDLVNVIHS IFQSVQRIPI TKEELLHKIL VNTLDFVEIR AVEEQIESLE
501: KLVPDWICKK LVATGDTMYC INKVSDLDSV RSRLSTNVV

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.