Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30328 | Soybean | mitochondrion | 9.47 | 46.15 |
| Zm00001d046390_P001 | Maize | cytosol | 15.09 | 35.68 |
| EES11553 | Sorghum | nucleus | 34.39 | 34.88 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 33.68 | 34.41 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 33.68 | 34.41 |
| EER91446 | Sorghum | nucleus | 33.68 | 34.22 |
| Zm00001d026393_P001 | Maize | cytosol | 15.79 | 34.22 |
| Zm00001d026469_P002 | Maize | nucleus | 32.98 | 33.45 |
| Os10t0489900-01 | Rice | nucleus | 33.51 | 33.33 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 32.98 | 33.16 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 20.88 | 32.6 |
| Zm00001d032621_P001 | Maize | nucleus | 32.63 | 32.29 |
| HORVU1Hr1G044120.10 | Barley | plastid | 34.74 | 31.58 |
| Zm00001d002056_P006 | Maize | extracellular | 32.11 | 31.5 |
| KRH52336 | Soybean | cytosol | 12.98 | 31.09 |
| Solyc03g019960.2.1 | Tomato | nucleus | 22.81 | 27.6 |
| KRH38848 | Soybean | nucleus | 25.61 | 27.09 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 6.67 | 26.95 |
| KRH09362 | Soybean | mitochondrion | 22.81 | 26.64 |
| PGSC0003DMT400039343 | Potato | nucleus | 24.04 | 26.6 |
| GSMUA_Achr10P... | Banana | nucleus | 24.04 | 25.14 |
| GSMUA_Achr8P03390_001 | Banana | cytosol, nucleus, plastid | 15.61 | 23.12 |
| GSMUA_Achr9P25190_001 | Banana | endoplasmic reticulum, vacuole | 23.16 | 13.82 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P10650_001 | EnsemblPlants:GSMUA_Achr2T10650_001 | EnsemblPlantsGene:GSMUA_Achr2G10650_001 | Gene3D:1.10.10.1420 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C |
| InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 | PFAM:PF08839 | PFAM:PF16679 | SEG:seg | SMART:SM01075 |
| SUPFAM:SSF46785 | UniParc:UPI000295EFB1 | UniProt:M0S6V6 | MapMan:13.2.1.3 | : | : |
Description
CDT1B - Putative DNA replication initiation protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G10650_001]
Coordinates
chr2:+:13695719..13700186
Molecular Weight (calculated)
63888.7 Da
IEP (calculated)
6.337
GRAVY (calculated)
-0.514
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHEGCKMNT PTNLGSGVTL PVMSNKRDSD SESLEDMKID RKQGLGSSLA TPTPEKPEWS SKARVISSLS RKQLAEDLRN EETVEQNGLS HGQKKEHKSD
101: ELPENYQILA ELFSRLETST RLLGLRKLLP TFRNICTQVE VLTKRKILYS HIAQMKYIFP EAIQTEKILV HDKESLLVIP DMKITLLKEV VDHNSHSCQS
201: ASVALCKTFR ARLLDFFITH PEGTDIPEAE LPEPFNQRSH SLPLELLPEN SCIEPREISA ELGFLSNSSL LPSSFKRQFS KKGVISETHT TQVLAASVSF
301: KSTSSCDAAK EGSSPPKFDS LSSGLAKNSS ADMTSNSDSP TIFQYFESTP VKGALQLGEM TDTPAQQTPK RPVPTPHEKL TTESEESVDE ARLTTSARRS
401: LIYSTNMEET VKGSVTNTSQ KCMVAEYSSH EAPSTRSYIW EEETGKSRTH LVDMVHNLTA ANSKDYKLVQ MGDRKHNEML AGLSETFDAI CFISRSINCS
501: IITKEELLHK ILSNNLEIEE TREAEEHLSL LERLLPDWIS KKAASNGQHF YRQVISNQVI RIMFSCKNFL
101: ELPENYQILA ELFSRLETST RLLGLRKLLP TFRNICTQVE VLTKRKILYS HIAQMKYIFP EAIQTEKILV HDKESLLVIP DMKITLLKEV VDHNSHSCQS
201: ASVALCKTFR ARLLDFFITH PEGTDIPEAE LPEPFNQRSH SLPLELLPEN SCIEPREISA ELGFLSNSSL LPSSFKRQFS KKGVISETHT TQVLAASVSF
301: KSTSSCDAAK EGSSPPKFDS LSSGLAKNSS ADMTSNSDSP TIFQYFESTP VKGALQLGEM TDTPAQQTPK RPVPTPHEKL TTESEESVDE ARLTTSARRS
401: LIYSTNMEET VKGSVTNTSQ KCMVAEYSSH EAPSTRSYIW EEETGKSRTH LVDMVHNLTA ANSKDYKLVQ MGDRKHNEML AGLSETFDAI CFISRSINCS
501: IITKEELLHK ILSNNLEIEE TREAEEHLSL LERLLPDWIS KKAASNGQHF YRQVISNQVI RIMFSCKNFL
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.