Factsheet for VIT_16s0039g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30328	Soybean	mitochondrion	17.81	55.56
Zm00001d046390_P001	Maize	cytosol	16.44	24.9
Zm00001d026393_P001	Maize	cytosol	17.26	23.95
KRH52336	Soybean	cytosol	15.62	23.95
Solyc03g019960.2.1	Tomato	nucleus	28.77	22.29
KRH09362	Soybean	mitochondrion	29.32	21.93
PGSC0003DMT400039343	Potato	nucleus	29.86	21.16
GSMUA_Achr2P10650_001	Banana	nucleus	32.6	20.88
KRH38848	Soybean	nucleus	29.86	20.22
TraesCS1D01G173500.1	Wheat	nucleus	27.67	18.1
Os10t0489900-01	Rice	nucleus	28.22	17.98
EES11553	Sorghum	nucleus	27.67	17.97
Zm00001d026469_P002	Maize	nucleus	27.4	17.79
TraesCS1B01G183800.1	Wheat	nucleus	27.12	17.74
EER91446	Sorghum	nucleus	27.12	17.65
TraesCS1A01G167400.1	Wheat	nucleus	27.12	17.46
Zm00001d002056_P006	Maize	extracellular	27.4	17.21
Zm00001d032621_P001	Maize	nucleus	26.3	16.67
VIT_07s0005g03090.t01	Wine grape	nucleus	26.03	16.46
HORVU1Hr1G044120.10	Barley	plastid	28.22	16.43
VIT_16s0039g00480.t01	Wine grape	cytosol	4.11	10.64

Protein Annotations

MapMan:13.2.1.3	ProteinID:CCB50528	ProteinID:CCB50528.1	InterPro:CDT1_Gemini-bd-like	UniProt:F6HE82	EMBL:FN595750
GO:GO:0000076	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0051276	PFAM:PF08839	PANTHER:PTHR28637
SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI000210877D	ArrayExpress:VIT_16s0039g00430	EnsemblPlantsGene:VIT_16s0039g00430	EnsemblPlants:VIT_16s0039g00430.t01
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:+:212453..217395

Molecular Weight (calculated)

41144.7 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.145

Length

365 amino acids

Sequence
(BLAST)

001: MNCSLRLLGL RKKPTTFQNI CTQVEILTKR KFSYRHLAQI KYILPEVVQI DYILIHDVKS LCMKPDMKIS LLFDVIEGHQ EKSTFMALRQ VFAYRLLDFF
101: NIHPEVIAAA LLLLVTYRWH VTIFSQDLFE LNSVLFFGEQ GCDIPEAILP EPFNQRTQNI IPKSLPVDSS IESQPTSEVE LLANSCHLNP SFRRHFSEKA
201: VVAETGKTQL LASLVPLLSS SSDIVTNKEI KSEQHKESSE LYSESTIIKP PVGLICPQSS VSSSACESPY LKHPMVSDCL MVETPAQLTP KRSMPSCDNK
301: LKTVTRQMGT SCHMPTKRSL DFSCLEGDES VLNTLDEPEC HKVIHDTLSQ TVEAKGIVSH GEYNE

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.