CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30328	Soybean	mitochondrion	20.49	85.47
KRH38848	Soybean	nucleus	78.07	70.69
KRH52336	Soybean	cytosol	21.52	44.12
VIT_16s0039g00480.t01	Wine grape	cytosol	10.66	36.88
PGSC0003DMT400039343	Potato	nucleus	30.94	29.32
VIT_16s0039g00430.t01	Wine grape	mitochondrion	21.93	29.32
Zm00001d046390_P001	Maize	cytosol	12.5	25.31
Solyc03g019960.2.1	Tomato	nucleus	22.75	23.57
EER91446	Sorghum	nucleus	27.05	23.53
Zm00001d026393_P001	Maize	cytosol	12.5	23.19
GSMUA_Achr2P10650_001	Banana	nucleus	26.64	22.81
EES11553	Sorghum	nucleus	26.02	22.6
Zm00001d026469_P002	Maize	nucleus	25.82	22.42
Os10t0489900-01	Rice	nucleus	25.61	21.82
Zm00001d002056_P006	Maize	extracellular	25.61	21.51
Zm00001d032621_P001	Maize	nucleus	25.2	21.35
TraesCS1B01G183800.1	Wheat	nucleus	24.39	21.33
TraesCS1D01G173500.1	Wheat	nucleus	24.39	21.33
TraesCS1A01G167400.1	Wheat	nucleus	24.18	20.81
HORVU1Hr1G044120.10	Barley	plastid	24.39	18.98
KRH32170	Soybean	plastid	21.52	17.62
KRH19542	Soybean	nucleus	20.49	16.16

Protein Annotations

Gene3D:1.10.10.1420	MapMan:13.2.1.3	EMBL:ACUP02010276	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	EnsemblPlantsGene:GLYMA_16G211300
GO:GO:0000076	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0051276	UniProt:K7MIU9	EnsemblPlants:KRH09362
ProteinID:KRH09362	ProteinID:KRH09362.1	PFAM:PF08839	PFAM:PF16679	PANTHER:PTHR28637	SMART:SM01075
SUPFAM:SSF46785	UniParc:UPI000295A2AD	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:37020390..37024639

Molecular Weight (calculated)

55169.5 Da

IEP (calculated)

5.717

GRAVY (calculated)

-0.443

Length

488 amino acids

Sequence
(BLAST)

001: MSCSLRLLHL CKKTPIFQNV CRQVEVLSKR KFSHAHLAQM KYILPKSVCI DKVLVHDKKS LCMVTDMKIT LKFEVVKDCS GESADLALRR YFKSKLIDFF
101: DMHPEVADIP EAPLPEPFGK KSCRSNCKDS HVEEFTGQSP HVNSSTELFS ISNQTEMLPE QLQLYPSFSR HFSRKNNTDQ AEKAQCFLPT KTSPSSHAFD
201: FLDNEESEKT LQKECVPLYD DVANPIMERG HQKESFSMSF EPSVINTPVH MIHPPHSVTC SDSESPYLKN ISCAADSFIA ETPAQSAPAR LLPISDVKLQ
301: DMPTQKSTSS YKPAKRVLDF SLMEDNDGLG IEVDKLESIR DLHEFDSFPE SSRGCSEDCN SFGSVSAPQE AEESLGYASE KITQKQADLD TQHKKSSPLL
401: NLVNVIHSIF QSVQRIPITK EELQHKILMN TLDFVEIREV EEQIEYLEKL VPDWICKKLV ATGDTVYCIN KVSDLDSVRS RLSSNETV

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.