CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026469_P002	Maize	nucleus	90.39	90.39
Zm00001d002056_P006	Maize	extracellular	85.94	83.13
EER91446	Sorghum	nucleus	79.72	79.86
Os10t0489900-01	Rice	nucleus	61.92	60.73
TraesCS1B01G183800.1	Wheat	nucleus	56.94	57.35
TraesCS1D01G173500.1	Wheat	nucleus	56.58	56.99
TraesCS1A01G167400.1	Wheat	nucleus	57.12	56.61
HORVU1Hr1G044120.10	Barley	plastid	55.52	49.76
KRH30328	Soybean	mitochondrion	9.43	45.3
GSMUA_Achr2P10650_001	Banana	nucleus	34.88	34.39
KRH52336	Soybean	cytosol	12.63	29.83
VIT_16s0039g00430.t01	Wine grape	mitochondrion	17.97	27.67
PGSC0003DMT400039343	Potato	nucleus	24.56	26.8
VIT_16s0039g00480.t01	Wine grape	cytosol	6.58	26.24
KRH09362	Soybean	mitochondrion	22.6	26.02
KRH38848	Soybean	nucleus	24.91	25.97
Solyc03g019960.2.1	Tomato	nucleus	21.71	25.9
EER89201	Sorghum	nucleus	24.2	23.65

Protein Annotations

MapMan:13.2.1.3	EntrezGene:8079590	UniProt:C5Y946	InterPro:CDT1_Gemini-bd-like	EnsemblPlants:EES11553	ProteinID:EES11553
ProteinID:EES11553.1	GO:GO:0000076	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0051276	ProteinID:OQU82459.1
PFAM:PF08839	PANTHER:PTHR28637	SMART:SM01075	EnsemblPlantsGene:SORBI_3006G242500	SUPFAM:SSF46785	UniParc:UPI0001A86D9E
InterPro:WH_DNA-bd_sf	RefSeq:XP_002447225.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:58299605..58304141

Molecular Weight (calculated)

62627.4 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.588

Length

562 amino acids

Sequence
(BLAST)

001: MSEANTTQLD LEKGFSQVSN DNDSSSPATV HKMKAETEDG GSEIESPTPE KRESRSKGVV VSSLARNLLA ERYKDRFAYQ LVEDEGETDE EDYNESVSPS
101: GSRSLFPESI ELLEKHKDLL NLFNRMESSI RLLHLRKKMA TFNNIATQVE ILAKRKLLYS HLAQMKHLFP EAIQIKRILV HDEKSLCMYA DMEITLVMDV
201: VECTSPDQSP SMTICEAFYS KLLRFLDAHH KGADIPEAIL PEPFNSRPRD KLYLEAVHNG HAAEPPMQGA AEEELSNASH FPQSFQKLMS QKIIADGTEK
301: TQLLSDPAEL SSVNVYDTEG SDRNPKKQDE HAPAPVNSEI SATPSRHLTS CCQESTPKQG TSESPLLSGT PAMQTPNRPL PTPLEKPKVT CGHISEPRSA
401: SSARRSLNTS LKFEGGSPSY YDGMEHTTTA EKGIISEDSS SFNKSFEEDS PVFFTDKDKI NEVDSVDTQE RMASLHTTFD IVCDISRSTK NSLITKQELF
501: HNILANNLEI EEIGEIEEQL HILEDLAPSL ISKKVINGGE ILYSIEPITD QNSVRARLVE PV

Best Arabidopsis Sequence Match ( AT3G54710.1 )
(BLAST)

001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY

Arabidopsis Description

CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.