CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89201
EER98514
EES15109
EES19490
OQU85005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	OQU85005	AT1G08260.1	22773747
AT2G31270.1	EER89201	AT2G31270.1	22773747
AT2G31270.1	EES19490	AT5G13060.1	18818695
AT2G31270.1	EES15109	AT5G22110.1	22773747
AT3G54710.1	OQU85005	AT1G08260.1	22773747
AT3G54710.1	EER98514	AT2G27470.1	22773747
AT3G54710.1	EER89201	AT3G54710.1	22773747
AT3G54710.1	EES19490	AT5G13060.1	18818695
AT3G54710.1	EES15109	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045354_P002	Maize	nucleus	83.13	83.42
HORVU2Hr1G003370.11	Barley	cytosol	51.83	63.68
TraesCS2D01G023000.1	Wheat	cytosol, plastid	57.74	61.48
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	62.78	61.39
TraesCS2A01G022200.1	Wheat	plastid	60.35	60.03
TraesCS2B01G030600.1	Wheat	plastid	60.52	60.0
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	44.52	58.58
GSMUA_Achr10P...	Banana	nucleus	43.83	46.24
HORVU4Hr1G047140.6	Barley	plastid	16.0	42.2
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	24.7	36.88
VIT_07s0005g03090.t01	Wine grape	nucleus	36.17	36.05
AT2G31270.1	Thale cress	nucleus, plastid	34.09	34.33
Solyc06g008510.2.1	Tomato	nucleus, plastid	34.09	33.62
PGSC0003DMT400028257	Potato	nucleus, plastid	33.74	33.28
Solyc01g006140.2.1	Tomato	nucleus	32.87	33.04
CDX84793	Canola	nucleus, plastid	31.48	32.85
Bra022834.1-P	Field mustard	nucleus, plastid	31.48	32.85
CDY24744	Canola	nucleus	33.22	32.59
CDY23948	Canola	nucleus, plastid	31.3	32.55
Bra018272.1-P	Field mustard	nucleus	32.52	31.86
KRH32170	Soybean	plastid	32.87	31.71
CDY10780	Canola	nucleus	32.35	31.69
CDY67450	Canola	cytosol	14.61	31.34
CDY15409	Canola	nucleus, plastid	26.96	31.25
KRH19542	Soybean	nucleus	32.87	30.53
CDX76137	Canola	cytosol, plastid	24.7	30.08
Bra014797.1-P	Field mustard	cytosol, plastid	24.0	30.0
CDX76134	Canola	cytosol, plastid	24.35	29.98
Bra014795.1-P	Field mustard	cytosol	18.26	29.83
AT3G54710.1	Thale cress	cytosol, plastid	24.52	29.01
CDY13226	Canola	cytosol, plastid	23.83	28.72
EER91446	Sorghum	nucleus	25.74	26.38
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	42.78	25.76
EES11553	Sorghum	nucleus	23.65	24.2

Protein Annotations

Gene3D:1.10.10.1420	MapMan:13.2.1.3	EntrezGene:8071312	UniProt:C5Z3Z5	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C
ncoils:Coil	EnsemblPlants:EER89201	ProteinID:EER89201	ProteinID:EER89201.1	GO:GO:0000076	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0051276	PFAM:PF08839	PFAM:PF16679	PANTHER:PTHR28637	PANTHER:PTHR28637:SF5
SMART:SM01075	EnsemblPlantsGene:SORBI_3010G038200	SUPFAM:SSF46785	UniParc:UPI0001A89B16	InterPro:WH_DNA-bd_sf	RefSeq:XP_002437834.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:3034482..3037454

Molecular Weight (calculated)

63102.5 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.462

Length

575 amino acids

Sequence
(BLAST)

001: MDATPPSKKA KTTAAAAPPP PHKLREAAAL AHEVRTPEKP AKKLALAPAA PAAEQIPTPE KPVEMPRARG RSVAFSVKGI RQAALGLRRP AAHAEAAAED
101: ELESVERELG VGAGASRSPV KRKAEVKLPE SYEMLCEFFN CLESSTRLLR MKGSKATFPN ICSSIQHLTE RRFTHSHLAQ LKYIMPEAIV INKILLRDDT
201: TCCMYPDLQV NLLVSAVENV VKQKGETAYL ALRRIFRQRL VEFYREHPEG DDIPEHELPH PFNRTGSSMT QDEQRTVPQS SSPVKPSDVT GQQTAVMSHM
301: SQSFKRRFSQ RSPISSTTAS APSPLGKVAS TVPSPLSRNS LFSRDVSGSM CGDDKPSAKE VFCKSGVLEN TPAKFASTPV RLMAPTPDLK TPKRPISATG
401: YDTPPLKIAK RSARAKLFTT PTKDSSMDGE NQSASISGAD ADAGDELLSF LPKSLLESVK EKEERALEEK ETGFADQVKR QKLIASLPST FDIIFLIYQS
501: RQRSVMTKQE LIHKIIASSP KIADRSEVEE HLTLLKELVP DWISEKTARS GDALCCIDAT LSQSEIRQRL YAAAE

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.