Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76137 | Canola | cytosol, plastid | 88.65 | 87.71 |
| CDY13226 | Canola | cytosol, plastid | 87.58 | 85.74 |
| CDY67450 | Canola | cytosol | 46.25 | 80.6 |
| AT3G54710.1 | Thale cress | cytosol, plastid | 59.53 | 57.2 |
| CDY23948 | Canola | nucleus, plastid | 37.47 | 31.65 |
| CDX84793 | Canola | nucleus, plastid | 37.05 | 31.4 |
| CDY10780 | Canola | nucleus | 38.54 | 30.66 |
| CDY24744 | Canola | nucleus | 38.33 | 30.55 |
| VIT_07s0005g03090.t01 | Wine grape | nucleus | 36.83 | 29.81 |
| CDY15409 | Canola | nucleus, plastid | 30.84 | 29.03 |
| HORVU2Hr1G003370.11 | Barley | cytosol | 28.48 | 28.42 |
| Solyc06g008510.2.1 | Tomato | nucleus, plastid | 34.9 | 27.96 |
| PGSC0003DMT400028257 | Potato | nucleus, plastid | 34.48 | 27.62 |
| KRH32170 | Soybean | plastid | 34.9 | 27.35 |
| GSMUA_Achr10P... | Banana | nucleus | 31.26 | 26.79 |
| TraesCS2D01G023500.1 | Wheat | endoplasmic reticulum | 25.05 | 26.77 |
| TraesCS2D01G023000.1 | Wheat | cytosol, plastid | 30.84 | 26.67 |
| KRH19542 | Soybean | nucleus | 33.4 | 25.2 |
| Solyc01g006140.2.1 | Tomato | nucleus | 30.41 | 24.83 |
| TraesCS2A01G022200.1 | Wheat | plastid | 30.62 | 24.74 |
| EER89201 | Sorghum | nucleus | 29.98 | 24.35 |
| HORVU4Hr1G047140.6 | Barley | plastid | 11.35 | 24.31 |
| TraesCS2B01G030600.1 | Wheat | plastid | 30.19 | 24.31 |
| Os04t0185100-01 | Rice | cytosol, mitochondrion, plastid | 29.98 | 23.81 |
| Zm00001d045354_P002 | Maize | nucleus | 29.12 | 23.73 |
| GSMUA_Achr8P03390_001 | Banana | cytosol, nucleus, plastid | 19.49 | 23.64 |
| GSMUA_Achr9P25190_001 | Banana | endoplasmic reticulum, vacuole | 32.33 | 15.81 |
Protein Annotations
| EnsemblPlants:CDX76134 | EnsemblPlantsGene:GSBRNA2T00126422001 | Gene3D:1.10.10.1420 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C | InterPro:WH_DNA-bd_sf |
| PANTHER:PTHR28637 | PANTHER:PTHR28637:SF5 | PFAM:PF08839 | PFAM:PF16679 | ProteinID:CDX76134 | ProteinID:CDX76134.1 |
| SEG:seg | SMART:SM01075 | SUPFAM:SSF46785 | UniParc:UPI0004EE3B76 | MapMan:13.2.1.3 | : |
Description
BnaA04g03980D
Coordinates
chrLK031806:-:1236943..1239454
Molecular Weight (calculated)
52864.5 Da
IEP (calculated)
4.621
GRAVY (calculated)
-0.595
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSIENASKK PSMASESWNP ETLFSTKTPD KTATLSTRPR DCDKPVRRQI LTSPRKPETT VKLPERFEIL DECFNGLVTA IRLLKLKGSL TSFANICPKI
101: EYLTNRIFSY DHLAQMKHIY PEATEVKRVL KCDEVTSCMK PTLHINLNTD AIELEDTSCG TKYMQLRNVF YSKLVDFYKA HPKDEIPKEL LPEPFNFSKK
201: DSDTISVVDV GASKLENDGF DVQMEEMKQE EEEEDKVIPD LTLSDGTEEC LLPHTESTPA KVLSTPSKDL STPIKLMSAT PTLQPSRRCI TMTPDDDNDS
301: VRPTNDLERR TSRTRCLNFD TLEEEDGTVS DESNDEASDA SSDEDSDASF DEISLLHSMI EEPKAETVKQ NLPKLVNVIH KLFHSTKRTV ITKEELLHKM
401: IACQIEIMDR KEVEEQLRLM LQLVPDWISE TKASFGDVLV SINKMSTPET VRARLEEATS QDSSTVP
101: EYLTNRIFSY DHLAQMKHIY PEATEVKRVL KCDEVTSCMK PTLHINLNTD AIELEDTSCG TKYMQLRNVF YSKLVDFYKA HPKDEIPKEL LPEPFNFSKK
201: DSDTISVVDV GASKLENDGF DVQMEEMKQE EEEEDKVIPD LTLSDGTEEC LLPHTESTPA KVLSTPSKDL STPIKLMSAT PTLQPSRRCI TMTPDDDNDS
301: VRPTNDLERR TSRTRCLNFD TLEEEDGTVS DESNDEASDA SSDEDSDASF DEISLLHSMI EEPKAETVKQ NLPKLVNVIH KLFHSTKRTV ITKEELLHKM
401: IACQIEIMDR KEVEEQLRLM LQLVPDWISE TKASFGDVLV SINKMSTPET VRARLEEATS QDSSTVP
001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
Arabidopsis Description
CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.