Factsheet for Solyc01g006140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006140.2.1
Solyc03g098250.2.1
Solyc06g008510.2.1
Solyc06g084250.2.1
Solyc09g065210.2.1
Solyc11g067110.1.1
Solyc11g067120.1.1
Solyc11g067130.1.1
Solyc11g067140.1.1
Solyc11g068480.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	Solyc11g067110.1.1	AT1G08260.1	22773747
AT2G31270.1	Solyc11g067120.1.1	AT1G08260.1	22773747
AT2G31270.1	Solyc11g067130.1.1	AT1G08260.1	22773747
AT2G31270.1	Solyc11g067140.1.1	AT1G08260.1	22773747
AT2G31270.1	Solyc01g006140.2.1	AT2G31270.1	22773747
AT2G31270.1	Solyc06g008510.2.1	AT2G31270.1	22773747
AT2G31270.1	Solyc06g084250.2.1	AT5G13060.1	18818695
AT2G31270.1	Solyc09g065210.2.1	AT5G13060.1	18818695
AT2G31270.1	Solyc03g098250.2.1	AT5G22110.1	22773747
AT3G54710.1	Solyc11g067110.1.1	AT1G08260.1	22773747
AT3G54710.1	Solyc11g067120.1.1	AT1G08260.1	22773747
AT3G54710.1	Solyc11g067130.1.1	AT1G08260.1	22773747
AT3G54710.1	Solyc11g067140.1.1	AT1G08260.1	22773747
AT3G54710.1	Solyc11g068480.1.1	AT2G27470.1	22773747
AT3G54710.1	Solyc01g006140.2.1	AT3G54710.1	22773747
AT3G54710.1	Solyc06g008510.2.1	AT3G54710.1	22773747
AT3G54710.1	Solyc06g084250.2.1	AT5G13060.1	18818695
AT3G54710.1	Solyc09g065210.2.1	AT5G13060.1	18818695
AT3G54710.1	Solyc03g098250.2.1	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008510.2.1	Tomato	nucleus, plastid	45.63	44.77
VIT_07s0005g03090.t01	Wine grape	nucleus	44.23	43.85
GSMUA_Achr10P...	Banana	nucleus	34.79	36.51
Bra022834.1-P	Field mustard	nucleus, plastid	34.97	36.3
CDX84793	Canola	nucleus, plastid	34.97	36.3
HORVU2Hr1G003370.11	Barley	cytosol	29.37	35.9
CDY23948	Canola	nucleus, plastid	34.62	35.8
AT2G31270.1	Thale cress	nucleus, plastid	35.49	35.55
CDY67450	Canola	cytosol	16.43	35.07
CDY24744	Canola	nucleus	35.66	34.81
Bra018272.1-P	Field mustard	nucleus	35.49	34.58
CDY10780	Canola	nucleus	35.31	34.41
TraesCS2D01G023000.1	Wheat	cytosol, plastid	32.34	34.26
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	26.05	34.1
CDY15409	Canola	nucleus, plastid	29.2	33.67
KRH32170	Soybean	plastid	34.79	33.39
EER89201	Sorghum	nucleus	33.04	32.87
TraesCS2A01G022200.1	Wheat	plastid	32.87	32.53
Zm00001d045354_P002	Maize	nucleus	32.34	32.29
TraesCS2B01G030600.1	Wheat	plastid	32.52	32.07
KRH19542	Soybean	nucleus	34.44	31.83
Bra014797.1-P	Field mustard	cytosol, plastid	25.35	31.52
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	31.99	31.12
CDX76134	Canola	cytosol, plastid	24.83	30.41
CDY13226	Canola	cytosol, plastid	25.17	30.19
CDX76137	Canola	cytosol, plastid	24.83	30.08
AT3G54710.1	Thale cress	cytosol, plastid	25.52	30.04
Bra014795.1-P	Field mustard	cytosol	18.18	29.55
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	18.53	27.53
HORVU4Hr1G047140.6	Barley	plastid	10.31	27.06
Solyc03g019960.2.1	Tomato	nucleus	20.63	25.05
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	33.92	20.31

Protein Annotations

Gene3D:1.10.10.1420	MapMan:13.2.1.3	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	GO:GO:0000076	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0051276	UniProt:K4ASI0	PFAM:PF08839	PFAM:PF16679	PANTHER:PTHR28637
PANTHER:PTHR28637:SF5	SMART:SM01075	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc01g006140.2	EnsemblPlants:Solyc01g006140.2.1	UniParc:UPI0002761ECD
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:789370..793859

Molecular Weight (calculated)

63439.7 Da

IEP (calculated)

9.802

GRAVY (calculated)

-0.367

Length

572 amino acids

Sequence
(BLAST)

001: MEFTGSSPSD RKSLPANPFR SEKSAGVVAI PVMDQWRTKT PEKPIQNRMA RSLQSLKDVR EASQKLRKHD LIQREVSDPL LSYGEVKSPL VAGSPVSERK
101: KHVNSVKLPE KYEMLEKFFN SMDSSIRLLH LKGSATTFTN ISAKVESLID KRFTCSHLAQ LKFILPEAIE IKKILKHDER SWCMKPDLYI TLNANAVDNS
201: EKWKSNSSSV LLRKIFRSRL LDFFKSHPEG DDIPEGMLPG PFTQSKQVVT NSCRPSGSSL TSEAPNGVFP LQSIAASHLS VSFKRCFSNR ASITGGTDLK
301: ERDRVGLGLV SPASIPLNVP SSTKKKTVAC SDAPKLSLKQ TSIMKCSAGG VVLASSPCHP PALPMIEAKK GEDGSTSAPA TPMLEPPKRC YMSPDDPAES
401: PIKLARRPST RRSLLFGTPV KSANAGDKVC ENGRFSTDND ILDILPENLL QSIGEKESEA LAEQNPAISQ AKRRKQMIAC LPHLFDMIYF LFQSIKRSVM
501: TKEELMHRVI SSHLEITDKS EVEQQLLLLQ ELAPEWIYEK PASNGTLLLL VSKISNPDTI RSRLAEIFLF LK

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.