Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039343 | Potato | nucleus | 68.79 | 62.91 |
| KRH30328 | Soybean | mitochondrion | 12.1 | 48.72 |
| KRH52336 | Soybean | cytosol | 15.92 | 31.51 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 22.29 | 28.77 |
| Zm00001d046390_P001 | Maize | cytosol | 13.59 | 26.56 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 7.64 | 25.53 |
| KRH38848 | Soybean | nucleus | 27.6 | 24.12 |
| Zm00001d026393_P001 | Maize | cytosol | 13.38 | 23.95 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 27.6 | 22.81 |
| KRH09362 | Soybean | mitochondrion | 23.57 | 22.75 |
| Solyc06g008510.2.1 | Tomato | nucleus, plastid | 27.18 | 21.96 |
| Zm00001d026469_P002 | Maize | nucleus | 26.11 | 21.89 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 25.9 | 21.86 |
| EES11553 | Sorghum | nucleus | 25.9 | 21.71 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 25.48 | 21.51 |
| Zm00001d002056_P006 | Maize | extracellular | 26.11 | 21.17 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 25.48 | 21.16 |
| Solyc01g006140.2.1 | Tomato | nucleus | 25.05 | 20.63 |
| Os10t0489900-01 | Rice | nucleus | 24.84 | 20.42 |
| EER91446 | Sorghum | nucleus | 23.78 | 19.96 |
| Zm00001d032621_P001 | Maize | nucleus | 23.99 | 19.62 |
| HORVU1Hr1G044120.10 | Barley | plastid | 25.27 | 18.98 |
Protein Annotations
| MapMan:13.2.1.3 | InterPro:CDT1_Gemini-bd-like | GO:GO:0000076 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051276 |
| UniProt:K4BEW8 | PFAM:PF08839 | PANTHER:PTHR28637 | SMART:SM01075 | SUPFAM:SSF46785 | EnsemblPlantsGene:Solyc03g019960.2 |
| EnsemblPlants:Solyc03g019960.2.1 | UniParc:UPI00027688E6 | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:-:61250422..61254703
Molecular Weight (calculated)
53291.5 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.491
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKTDAVIAE EGVVDVKNQT EKSSVLSPLP LQKRGDSGVA TEFSSLTPAR KNEQSHIAHE IDTAELPEKY RNLSELFDRI LCSLRLLNLR KRAPTFQNVS
101: SQVEVLTGRK FTHKHLAQIK YIVPEAIQID KLLVHDAKTM CMKPDVNITL HFDVVEDHQE HSKFMTLNSL FASRLMNFFR KHAQDCDIPE AILPDPFNQR
201: CLTSNADLPL DLSSSRESKS LSSSHLCPSF SPRFSRQTAF AKIDQFSVPL STCSPCESEC TLNRELGSKR TSPELSKSSI NLNNVEECQP IPGCSLVENE
301: RTPQKILPES EIMLETPAQP TPKRSVPITE DKHKKMTDQE SVVLNLTVKR SLDFSTLAGE EMSSDLISGS IEQHHDLNTE KKTMSKEDHV DADICPNEKK
401: SCSFSKEEKI YQSHLTAVRQ ESFSLSDLVR LIHRIFQSVG CRSMTKVELV HKIIVHDFDI DENSMLMWKG R
101: SQVEVLTGRK FTHKHLAQIK YIVPEAIQID KLLVHDAKTM CMKPDVNITL HFDVVEDHQE HSKFMTLNSL FASRLMNFFR KHAQDCDIPE AILPDPFNQR
201: CLTSNADLPL DLSSSRESKS LSSSHLCPSF SPRFSRQTAF AKIDQFSVPL STCSPCESEC TLNRELGSKR TSPELSKSSI NLNNVEECQP IPGCSLVENE
301: RTPQKILPES EIMLETPAQP TPKRSVPITE DKHKKMTDQE SVVLNLTVKR SLDFSTLAGE EMSSDLISGS IEQHHDLNTE KKTMSKEDHV DADICPNEKK
401: SCSFSKEEKI YQSHLTAVRQ ESFSLSDLVR LIHRIFQSVG CRSMTKVELV HKIIVHDFDI DENSMLMWKG R
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.