Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91446 | Sorghum | nucleus | 83.33 | 85.56 |
| Zm00001d046390_P001 | Maize | cytosol | 31.42 | 75.1 |
| Zm00001d026469_P002 | Maize | nucleus | 73.09 | 74.91 |
| Zm00001d026393_P001 | Maize | cytosol | 32.12 | 70.34 |
| Zm00001d002056_P006 | Maize | extracellular | 70.31 | 69.71 |
| Os10t0489900-01 | Rice | nucleus | 56.25 | 56.54 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 53.65 | 55.38 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 52.78 | 54.48 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 52.95 | 53.79 |
| HORVU1Hr1G044120.10 | Barley | plastid | 52.26 | 48.01 |
| KRH30328 | Soybean | mitochondrion | 9.03 | 44.44 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 32.29 | 32.63 |
| KRH52336 | Soybean | cytosol | 11.98 | 28.99 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 16.67 | 26.3 |
| KRH38848 | Soybean | nucleus | 23.78 | 25.42 |
| KRH09362 | Soybean | mitochondrion | 21.35 | 25.2 |
| PGSC0003DMT400039343 | Potato | nucleus | 22.22 | 24.85 |
| Solyc03g019960.2.1 | Tomato | nucleus | 19.62 | 23.99 |
| Zm00001d045354_P002 | Maize | nucleus | 23.44 | 23.56 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 5.21 | 21.28 |
Protein Annotations
| EnsemblPlants:Zm00001d032621_P001 | EnsemblPlants:Zm00001d032621_T001 | EnsemblPlantsGene:Zm00001d032621 | EntrezGene:100274350 | InterPro:CDT1_Gemini-bd-like | InterPro:WH_DNA-bd_sf |
| PANTHER:PTHR28637 | PFAM:PF08839 | ProteinID:ONM05577.1 | ProteinID:ONM05578.1 | SEG:seg | SMART:SM01075 |
| SUPFAM:SSF46785 | UniParc:UPI0008440E3A | UniProt:A0A1D6KSC5 | MapMan:13.2.1.3 | : | : |
Description
CDT1-like protein a chloroplastic
Coordinates
chr1:+:232348835..232352923
Molecular Weight (calculated)
64591.6 Da
IEP (calculated)
6.476
GRAVY (calculated)
-0.498
Length
576 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEGDATQLA LEKGLPQVSN DDGSSSPATM HKLKVDTEDA GSKIESPTPE KLESRSKGVV VSSLARNLLA ERYKDRFANQ FLEDEGDIDD EDYNDSISPG
101: MSRSQRSRSI ELLEKHKDLL NLFNRMESSI RLLRLRKRMA TFNNIATQVE ILAKRKLSYC HLAQMKYLFP EAIQIKRVLL HDEKSLCMYA DMEIILVMDV
201: VEYTSTDHSP SMTICDAFYS KLLTFLDAHH KGTDIPEAIL PEPFNLRSRG QLNLEASHNG HAAEPHLQGT TKDGFSNASH FPQSFRKLMS QKVITDGAER
301: TQLLLDPTKL SSVSAYDTEG TNRSPKKQDK HASVTVNSEI SATPSRHLIS RCQEGTPKQE TLESPLLAQT PATQTPKRQL PTPLEKLEAT CGHISEPRSA
401: SSARRSLNTS LKFEGGSPSY HDRMEHVATS KIGILSEDSS SFNKSLEENG PVFFTDRDKI NLADPVGVQE KMASLRSTFG IVCDISHSIK NSLITKQELF
501: HNILANNLEI EQMGEIEEQL HILEDLAPNW ISKKVINGEE ILYRQVSFGN TSKHPFLGLY HEILRYIFFS FAALKL
101: MSRSQRSRSI ELLEKHKDLL NLFNRMESSI RLLRLRKRMA TFNNIATQVE ILAKRKLSYC HLAQMKYLFP EAIQIKRVLL HDEKSLCMYA DMEIILVMDV
201: VEYTSTDHSP SMTICDAFYS KLLTFLDAHH KGTDIPEAIL PEPFNLRSRG QLNLEASHNG HAAEPHLQGT TKDGFSNASH FPQSFRKLMS QKVITDGAER
301: TQLLLDPTKL SSVSAYDTEG TNRSPKKQDK HASVTVNSEI SATPSRHLIS RCQEGTPKQE TLESPLLAQT PATQTPKRQL PTPLEKLEAT CGHISEPRSA
401: SSARRSLNTS LKFEGGSPSY HDRMEHVATS KIGILSEDSS SFNKSLEENG PVFFTDRDKI NLADPVGVQE KMASLRSTFG IVCDISHSIK NSLITKQELF
501: HNILANNLEI EQMGEIEEQL HILEDLAPNW ISKKVINGEE ILYRQVSFGN TSKHPFLGLY HEILRYIFFS FAALKL
001: MFSRFLEKLE RIAQFNIFSI AHQNHISRSK LCHVYSAVRC FQSGRFVCGD KSSLRHWSQS PTRVFGNRVS RAMKNEAQKA LFDYLHYTRT LSFVDAEHIG
101: KNSPRFVLAL LSKIDDTRKE DISQR
101: KNSPRFVLAL LSKIDDTRKE DISQR
Arabidopsis Description
Transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BAM9]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.