Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046390_P001 | Maize | cytosol | 73.0 | 79.67 |
| KRH30328 | Soybean | mitochondrion | 20.53 | 46.15 |
| Zm00001d032621_P001 | Maize | nucleus | 70.34 | 32.12 |
| EER91446 | Sorghum | nucleus | 65.78 | 30.84 |
| Zm00001d002056_P006 | Maize | extracellular | 62.36 | 28.23 |
| Zm00001d026469_P002 | Maize | nucleus | 60.08 | 28.11 |
| Os10t0489900-01 | Rice | nucleus | 52.47 | 24.08 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 50.95 | 24.01 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 50.19 | 23.66 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 50.95 | 23.63 |
| KRH52336 | Soybean | cytosol | 21.29 | 23.53 |
| HORVU1Hr1G044120.10 | Barley | plastid | 53.23 | 22.33 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 23.95 | 17.26 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 34.22 | 15.79 |
| KRH38848 | Soybean | nucleus | 28.14 | 13.73 |
| Solyc03g019960.2.1 | Tomato | nucleus | 23.95 | 13.38 |
| PGSC0003DMT400039343 | Potato | nucleus | 25.1 | 12.82 |
| KRH09362 | Soybean | mitochondrion | 23.19 | 12.5 |
| Zm00001d045354_P002 | Maize | nucleus | 25.86 | 11.87 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 2.66 | 4.96 |
Protein Annotations
| EnsemblPlants:Zm00001d026393_P001 | EnsemblPlants:Zm00001d026393_T001 | EnsemblPlantsGene:Zm00001d026393 | InterPro:CDT1_Gemini-bd-like | InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 |
| PFAM:PF08839 | ProteinID:AQK46468.1 | SMART:SM01075 | SUPFAM:SSF46785 | UniParc:UPI000842B27D | UniProt:A0A1D6JFB2 |
| MapMan:13.2.1.3 | : | : | : | : | : |
Description
CDT1-like protein a chloroplastic
Coordinates
chr10:+:145126653..145131892
Molecular Weight (calculated)
29545.8 Da
IEP (calculated)
8.093
GRAVY (calculated)
-0.248
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSRASDLKM SEGDATQFAL EKGSPQVSND DGSSSPATVH KLKVDTEDAG SKIESPTPEK LESRSKWVVV SSLARNLLAE RHKDLLNLFN RMESSIRLLR
101: LRKRMATFNN IATQVEILAK RKLSYCHLAQ MKYLFPEAIQ IKRVLLHDEK SLCMYADMKI ILVMDVVEYT SPDHSPSMAI CDAFYSKLLT FSDAHHKVPT
201: KEQVDALSKE LFALSTATGF MKLQWDLNET MELGPLVVKA LGVNNGSMGE DFKQKNVFLS LQL
101: LRKRMATFNN IATQVEILAK RKLSYCHLAQ MKYLFPEAIQ IKRVLLHDEK SLCMYADMKI ILVMDVVEYT SPDHSPSMAI CDAFYSKLLT FSDAHHKVPT
201: KEQVDALSKE LFALSTATGF MKLQWDLNET MELGPLVVKA LGVNNGSMGE DFKQKNVFLS LQL
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.