CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032621_P001	Maize	nucleus	85.56	83.33
EES11553	Sorghum	nucleus	79.86	79.72
Zm00001d046390_P001	Maize	cytosol	29.23	68.05
Zm00001d026393_P001	Maize	cytosol	30.84	65.78
TraesCS1B01G183800.1	Wheat	nucleus	59.71	60.04
Os10t0489900-01	Rice	nucleus	60.78	59.51
TraesCS1D01G173500.1	Wheat	nucleus	58.82	59.14
TraesCS1A01G167400.1	Wheat	nucleus	58.82	58.2
HORVU1Hr1G044120.10	Barley	plastid	56.68	50.72
KRH30328	Soybean	mitochondrion	9.27	44.44
GSMUA_Achr2P10650_001	Banana	nucleus	34.22	33.68
KRH52336	Soybean	cytosol	12.3	28.99
PGSC0003DMT400039343	Potato	nucleus	24.96	27.18
VIT_16s0039g00430.t01	Wine grape	mitochondrion	17.65	27.12
KRH09362	Soybean	mitochondrion	23.53	27.05
KRH38848	Soybean	nucleus	25.85	26.9
EER89201	Sorghum	nucleus	26.38	25.74
VIT_16s0039g00480.t01	Wine grape	cytosol	6.42	25.53
Solyc03g019960.2.1	Tomato	nucleus	19.96	23.78

Protein Annotations

Gene3D:1.10.10.1420	MapMan:13.2.1.3	EntrezGene:8067113	UniProt:C5WXD9	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C
ProteinID:EER91439.2	EnsemblPlants:EER91446	ProteinID:EER91446	ProteinID:EER91446.1	GO:GO:0000981	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	ProteinID:OQU91586.1	PFAM:PF08839
PFAM:PF16679	PANTHER:PTHR28637	SMART:SM01075	EnsemblPlantsGene:SORBI_3001G210000	SUPFAM:SSF46785	UniParc:UPI0001A824A8
InterPro:WH_DNA-bd_sf	RefSeq:XP_002464448.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:19254795..19259349

Molecular Weight (calculated)

62869.2 Da

IEP (calculated)

5.243

GRAVY (calculated)

-0.555

Length

561 amino acids

Sequence
(BLAST)

001: MSEGDATQID LEKGLLQMSN DDDSSSPATM HKMKVDTEDA GIKIESPTPE KLESRSKGVV VSSLARNLLA ERYKDRFANQ FVEDEGDTDD EDYNDSILPG
101: VSRSHMSRSI ELFEKHKDLL NLFNRMESSI RLLHLRKRMA TFSNIAAQVE ILTKRKLSYS HLAQMKHLFP EAIQIKRILL HDEKSLCMYA DMEIILVMDV
201: VECTSPDQSP SMAICEAFYS KLLRFLDTHH KGTDIPEATL PEPFNSRSKG QLFLEASHNG HAAEPHLQGT TEDGFSNASH FPQSFRKLMS QKVITDGAEK
301: TQLLPDPTKL SSVSAYDMEG TNRSPIKQDK HASFTVNSEI SATPSRHLIS CCQEGTPKQE TSESPLLVQT PAMQTPKRPL PTPLEKLEAT CGHISEPRSA
401: SSARRSLNTS LKFEGGSPSY HDRMEHEAAS KKEIFSEDSS SFNKSLEEKD PVFFTEDKIN LADQVGTQEK MASLRSTFDI VCGISHSTKN SLITKQELFH
501: NILANNLEIE QMGEVEEQLH ILEDLAPDWI SKKVINGGEI LYSIEPITDQ NSVRERLVEA V

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.