CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52336	Soybean	cytosol	72.65	35.71
Zm00001d046390_P001	Maize	cytosol	45.3	21.99
Zm00001d026393_P001	Maize	cytosol	46.15	20.53
KRH09362	Soybean	mitochondrion	85.47	20.49
VIT_16s0039g00430.t01	Wine grape	mitochondrion	55.56	17.81
KRH38848	Soybean	nucleus	81.2	17.63
Solyc03g019960.2.1	Tomato	nucleus	48.72	12.1
PGSC0003DMT400039343	Potato	nucleus	46.15	10.49
GSMUA_Achr2P10650_001	Banana	nucleus	46.15	9.47
EES11553	Sorghum	nucleus	45.3	9.43
Zm00001d002056_P006	Maize	extracellular	46.15	9.29
EER91446	Sorghum	nucleus	44.44	9.27
Zm00001d026469_P002	Maize	nucleus	44.44	9.25
TraesCS1B01G183800.1	Wheat	nucleus	43.59	9.14
TraesCS1D01G173500.1	Wheat	nucleus	43.59	9.14
Zm00001d032621_P001	Maize	nucleus	44.44	9.03
TraesCS1A01G167400.1	Wheat	nucleus	43.59	8.99
Os10t0489900-01	Rice	nucleus	42.73	8.73
HORVU1Hr1G044120.10	Barley	plastid	44.44	8.29
KRH32170	Soybean	plastid	29.91	5.87
KRH19542	Soybean	nucleus	29.06	5.49
VIT_16s0039g00480.t01	Wine grape	cytosol	2.56	2.13

Protein Annotations

EMBL:ACUP02006966	EnsemblPlants:KRH30328	EnsemblPlantsGene:GLYMA_11G176300	InterPro:CDT1_Gemini-bd-like	InterPro:WH_DNA-bd_sf	PANTHER:PTHR28637
PFAM:PF08839	ProteinID:KRH30328	ProteinID:KRH30328.1	SUPFAM:SSF46785	UniParc:UPI0006EDEAD4	UniProt:A0A0R0HS58
MapMan:13.2.1.3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:20701426..20701916

Molecular Weight (calculated)

13638.1 Da

IEP (calculated)

8.766

GRAVY (calculated)

0.212

Length

117 amino acids

Sequence
(BLAST)

001: MSCSLRLLHL CKKASIFQNV CRQVEVLSKR KFSHAHLAQM KYILPKSVCI DRVLVHDKKS LCMVPDMKIT LKFEVVEDCS GESADLALRR YFKSKLIDFF
101: DMHPEVVFIF IFSCYPC

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.