Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11553 | Sorghum | nucleus | 90.39 | 90.39 |
| Zm00001d002056_P006 | Maize | extracellular | 84.88 | 82.1 |
| Zm00001d032621_P001 | Maize | nucleus | 74.91 | 73.09 |
| Zm00001d046390_P001 | Maize | cytosol | 27.22 | 63.49 |
| Zm00001d026393_P001 | Maize | cytosol | 28.11 | 60.08 |
| Os10t0489900-01 | Rice | nucleus | 60.14 | 58.99 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 56.94 | 57.35 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 56.41 | 56.81 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 56.94 | 56.44 |
| HORVU1Hr1G044120.10 | Barley | plastid | 54.98 | 49.28 |
| KRH30328 | Soybean | mitochondrion | 9.25 | 44.44 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 33.45 | 32.98 |
| KRH52336 | Soybean | cytosol | 12.46 | 29.41 |
| PGSC0003DMT400039343 | Potato | nucleus | 25.27 | 27.57 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 17.79 | 27.4 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 6.58 | 26.24 |
| Solyc03g019960.2.1 | Tomato | nucleus | 21.89 | 26.11 |
| KRH38848 | Soybean | nucleus | 24.91 | 25.97 |
| KRH09362 | Soybean | mitochondrion | 22.42 | 25.82 |
| Zm00001d045354_P002 | Maize | nucleus | 23.13 | 22.69 |
Protein Annotations
| EMBL:BT065928 | EnsemblPlants:Zm00001d026469_P002 | EnsemblPlants:Zm00001d026469_T002 | EnsemblPlantsGene:Zm00001d026469 | EntrezGene:100383008 | InterPro:CDT1_Gemini-bd-like |
| InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 | PFAM:PF08839 | ProteinID:AQK46693.1 | ProteinID:AQK46694.1 | ProteinID:AQK46698.1 |
| ProteinID:AQK46700.1 | SEG:seg | SMART:SM01075 | SUPFAM:SSF46785 | UniParc:UPI0001A64842 | UniProt:C0PCA9 |
| MapMan:13.2.1.3 | : | : | : | : | : |
Description
CDT1-like protein a chloroplastic
Coordinates
chr10:+:146515760..146519994
Molecular Weight (calculated)
62901.3 Da
IEP (calculated)
5.404
GRAVY (calculated)
-0.522
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVNNTQLD LEKGFSQVSH DNDSSSPVTV HKMKVETEGG SEIESPTPEK RESRSKGVVV SSLARNLLAE RYKDRLANQL VEDESETDDE DYNESVSPSG
101: SRSLFLESIE LLEKHKDLLN LFNRMESSIR LLHLRKKMAT FNNIATQVEI LTKRKLLYSH LAQMKHLFPE AIQIKRILVH DEKSICMYAD MEITLVMDVV
201: ECTSPDHSLS MTICEAFYSK LLRFLDAHHK GADIPEAILP EPFNSRPREK LYLEAVHNGH AAEPPLHGAV EEGFSNASHF PQSFQKFMSK KIIADGTEKT
301: QLLSDPAELS SVSAYGTKGS NRNPKKQDEH APVPVNSEIS ATPSRHLISC CQESTPKQQT SESPLLSGTP AMQTPKRPLL APLEKPKATC GHISEPRSAS
401: SARRSLNTSL TYEGGSPSYY DGMEHTATAK KCMISEDLSS FNKSFEEDSH VFFTDKDKIN EVESVDSQER IASLRTTFDI VYDISHSTKN PLITKQELFH
501: NILANNLEIE EIGEIEEQLH ILEDLAPDLI SKKVINGGEI LYSIEPITDK NSVRARLVVE PV
101: SRSLFLESIE LLEKHKDLLN LFNRMESSIR LLHLRKKMAT FNNIATQVEI LTKRKLLYSH LAQMKHLFPE AIQIKRILVH DEKSICMYAD MEITLVMDVV
201: ECTSPDHSLS MTICEAFYSK LLRFLDAHHK GADIPEAILP EPFNSRPREK LYLEAVHNGH AAEPPLHGAV EEGFSNASHF PQSFQKFMSK KIIADGTEKT
301: QLLSDPAELS SVSAYGTKGS NRNPKKQDEH APVPVNSEIS ATPSRHLISC CQESTPKQQT SESPLLSGTP AMQTPKRPLL APLEKPKATC GHISEPRSAS
401: SARRSLNTSL TYEGGSPSYY DGMEHTATAK KCMISEDLSS FNKSFEEDSH VFFTDKDKIN EVESVDSQER IASLRTTFDI VYDISHSTKN PLITKQELFH
501: NILANNLEIE EIGEIEEQLH ILEDLAPDLI SKKVINGGEI LYSIEPITDK NSVRARLVVE PV
001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
Arabidopsis Description
CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.