Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G183800.1 | Wheat | nucleus | 72.89 | 81.9 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 72.73 | 80.42 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 70.97 | 79.75 |
| Os10t0489900-01 | Rice | nucleus | 53.11 | 58.12 |
| EER91446 | Sorghum | nucleus | 50.72 | 56.68 |
| EES11553 | Sorghum | nucleus | 49.76 | 55.52 |
| Zm00001d046390_P001 | Maize | cytosol | 21.21 | 55.19 |
| Zm00001d026469_P002 | Maize | nucleus | 49.28 | 54.98 |
| Zm00001d002056_P006 | Maize | extracellular | 49.44 | 53.36 |
| Zm00001d026393_P001 | Maize | cytosol | 22.33 | 53.23 |
| Zm00001d032621_P001 | Maize | nucleus | 48.01 | 52.26 |
| KRH30328 | Soybean | mitochondrion | 8.29 | 44.44 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 31.58 | 34.74 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 16.43 | 28.22 |
| KRH52336 | Soybean | cytosol | 10.21 | 26.89 |
| HORVU2Hr1G003370.11 | Barley | cytosol | 19.62 | 26.28 |
| Solyc03g019960.2.1 | Tomato | nucleus | 18.98 | 25.27 |
| PGSC0003DMT400039343 | Potato | nucleus | 20.41 | 24.85 |
| KRH38848 | Soybean | nucleus | 21.05 | 24.49 |
| KRH09362 | Soybean | mitochondrion | 18.98 | 24.39 |
| HORVU4Hr1G047140.6 | Barley | plastid | 8.13 | 23.39 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 4.78 | 21.28 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G044120.10 | EnsemblPlantsGene:HORVU1Hr1G044120 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C | InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 |
| PFAM:PF08839 | PFAM:PF16679 | SEG:seg | SMART:SM01075 | SUPFAM:SSF46785 | UniParc:UPI000B46B172 |
| UniProt:A0A287FCH1 | MapMan:13.2.1.3 | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:321862166..321866819
Molecular Weight (calculated)
69530.9 Da
IEP (calculated)
5.434
GRAVY (calculated)
-0.604
Length
627 amino acids
Sequence
(BLAST)
(BLAST)
001: RTVAFGLFRP PPPSLLQFPT PKRRTPAAAG RSHGELARPN CRTSPDPRPH GLPDLGSPCL ELRMVEGKSV QVDLEKGLNQ MPNDSNPTSP ATIQKMKPDM
101: EDSGSKIESP TLEKLESGRE EIVVSSLATN LLSERYKDRL AEKLLGNEDE TDDEDDNDIA LPDGSQSPAS NELLEKHKNL LNLFNRMESS IRLLCLRKKM
201: PTFTNIATQV EVLTKRKFLY SHLAQMKHLF PEAIQINRIL LHDQKSLCMY ADMEITLLND VVECNNPQES PAMAICEAFR SKLLCFLGSH HKGIDVPEAT
301: LPEPFNSREE LYLDALHNDN SVDGVLEFSS ENGFSNASHF PQSFQKLMSQ KSIAKVTEKT RLLSDPVEVT SLGADDTGGP DRSSNKHVSV PLNTNISDTP
401: NRHSISFCEN STPKQGISNS PSMAETPAMQ TPKRPLPTPV AKHETSSRHG SEARSNNSAR RSLIMFSPSK FNESPSATDA DTSKLDKDGV SSITEPEVTT
501: GKCLFPEETV TFTDLLLEND NKTVQVSSTN SQEKLDSLRV TFDVVCGISG STKNSLITKQ ELFHNILANN LEIEETGEIE EQLHILEDLS PDWISKELRG
601: GEILYRQLQA NIRSEVSSGK THRSHLR
101: EDSGSKIESP TLEKLESGRE EIVVSSLATN LLSERYKDRL AEKLLGNEDE TDDEDDNDIA LPDGSQSPAS NELLEKHKNL LNLFNRMESS IRLLCLRKKM
201: PTFTNIATQV EVLTKRKFLY SHLAQMKHLF PEAIQINRIL LHDQKSLCMY ADMEITLLND VVECNNPQES PAMAICEAFR SKLLCFLGSH HKGIDVPEAT
301: LPEPFNSREE LYLDALHNDN SVDGVLEFSS ENGFSNASHF PQSFQKLMSQ KSIAKVTEKT RLLSDPVEVT SLGADDTGGP DRSSNKHVSV PLNTNISDTP
401: NRHSISFCEN STPKQGISNS PSMAETPAMQ TPKRPLPTPV AKHETSSRHG SEARSNNSAR RSLIMFSPSK FNESPSATDA DTSKLDKDGV SSITEPEVTT
501: GKCLFPEETV TFTDLLLEND NKTVQVSSTN SQEKLDSLRV TFDVVCGISG STKNSLITKQ ELFHNILANN LEIEETGEIE EQLHILEDLS PDWISKELRG
601: GEILYRQLQA NIRSEVSSGK THRSHLR
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.