Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g019960.2.1 | Tomato | nucleus | 62.91 | 68.79 |
| KRH30328 | Soybean | mitochondrion | 10.49 | 46.15 |
| VIT_16s0039g00480.t01 | Wine grape | cytosol | 11.65 | 42.55 |
| KRH09362 | Soybean | mitochondrion | 29.32 | 30.94 |
| KRH52336 | Soybean | cytosol | 13.98 | 30.25 |
| KRH38848 | Soybean | nucleus | 31.65 | 30.24 |
| VIT_16s0039g00430.t01 | Wine grape | mitochondrion | 21.16 | 29.86 |
| Zm00001d046390_P001 | Maize | cytosol | 13.01 | 27.8 |
| Zm00001d026469_P002 | Maize | nucleus | 27.57 | 25.27 |
| Zm00001d026393_P001 | Maize | cytosol | 12.82 | 25.1 |
| EER91446 | Sorghum | nucleus | 27.18 | 24.96 |
| EES11553 | Sorghum | nucleus | 26.8 | 24.56 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 26.6 | 24.04 |
| TraesCS1D01G173500.1 | Wheat | nucleus | 26.02 | 24.01 |
| TraesCS1A01G167400.1 | Wheat | nucleus | 26.41 | 23.99 |
| Os10t0489900-01 | Rice | nucleus | 26.6 | 23.91 |
| TraesCS1B01G183800.1 | Wheat | nucleus | 25.83 | 23.84 |
| Zm00001d002056_P006 | Maize | extracellular | 26.02 | 23.06 |
| Zm00001d032621_P001 | Maize | nucleus | 24.85 | 22.22 |
| PGSC0003DMT400028257 | Potato | nucleus, plastid | 24.47 | 21.61 |
| HORVU1Hr1G044120.10 | Barley | plastid | 24.85 | 20.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400039343 | EnsemblPlantsGene:PGSC0003DMG400015216 | EntrezGene:102579973 | Gene3D:1.10.10.1420 | InterPro:CDT1_Gemini-bd-like | InterPro:WH_DNA-bd_sf |
| PANTHER:PTHR28637 | PFAM:PF08839 | PGSC:PGSC0003DMG400015216 | RefSeq:XP_006351544.1 | SEG:seg | SMART:SM01075 |
| SUPFAM:SSF46785 | UniParc:UPI000296840A | UniProt:M1B861 | MapMan:13.2.1.3 | : | : |
Description
CDT1a protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015216]
Coordinates
chr3:-:50159543..50166313
Molecular Weight (calculated)
57878.8 Da
IEP (calculated)
5.484
GRAVY (calculated)
-0.422
Length
515 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKTDAVIAE EGVLDVKNQT EKSSVLSPLP LQKRGDTGVA TEFSSLTPAK KNEQSHITHE IDIAELPEKY RNLSEFFDRI LCSLRLLNLR KRSPTFQNVS
101: SQVEVLTGRK FTHKHLAQIK YIVPEAIQID KLLVHDATTM CMKPDVNITL HFDVVEDHQE HSKFMTLNSL FASRLMNFLR KHAQDCDIPE AILPDPFNQR
201: CLTSNADLPL DLSSSHESKS LSSSHLCPSF SPRFSRQTAF AEAKIDQFSV PLSTCSPCES ECTLNRELDS KMTSPESSKS SINLNNVEEC QPIPGCSLVG
301: NERTPMKILP ESEIMLETPA QPTPKRSVPI TEDKHKKMTD QDSVVLNLTV KRSLDFSTLA GEEMSSDLIS GSLEQHHDLN IERKNMSKED HVNADICPNE
401: VQEKSCSFSK EEKIYPSHLT AARQESFSLS DLVRLIHRIF QSVGCRSMTK VELVHKIIVN DFDIDENTDV EGQIELLERL VPDWLCKKSA PTGDLVYSIK
501: NASDLNSVCE RVVGV
101: SQVEVLTGRK FTHKHLAQIK YIVPEAIQID KLLVHDATTM CMKPDVNITL HFDVVEDHQE HSKFMTLNSL FASRLMNFLR KHAQDCDIPE AILPDPFNQR
201: CLTSNADLPL DLSSSHESKS LSSSHLCPSF SPRFSRQTAF AEAKIDQFSV PLSTCSPCES ECTLNRELDS KMTSPESSKS SINLNNVEEC QPIPGCSLVG
301: NERTPMKILP ESEIMLETPA QPTPKRSVPI TEDKHKKMTD QDSVVLNLTV KRSLDFSTLA GEEMSSDLIS GSLEQHHDLN IERKNMSKED HVNADICPNE
401: VQEKSCSFSK EEKIYPSHLT AARQESFSLS DLVRLIHRIF QSVGCRSMTK VELVHKIIVN DFDIDENTDV EGQIELLERL VPDWLCKKSA PTGDLVYSIK
501: NASDLNSVCE RVVGV
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.